Hb_001956_130

Information

Type -
Description -
Location Contig1956: 100012-101974
Sequence    

Annotation

kegg
ID rcu:RCOM_0300260
description catalytic, putative
nr
ID XP_002533745.1
description catalytic, putative [Ricinus communis]
swissprot
ID P53078
description Suppressor of disruption of TFIIS OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDT1 PE=1 SV=1
trembl
ID B9T676
description Catalytic, putative OS=Ricinus communis GN=RCOM_0300260 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19586: 100034-102249
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001956_130 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_002221_060 0.0770362606 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000816_140 0.0838960084 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_000003_380 0.0883295316 - - conserved hypothetical protein [Ricinus communis]
5 Hb_010883_170 0.0907441069 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
6 Hb_012653_050 0.0939866416 - - hypothetical protein RCOM_0460020 [Ricinus communis]
7 Hb_000358_260 0.0946102208 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
8 Hb_003376_020 0.0965553699 - - PREDICTED: interactor of constitutive active ROPs 2, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000483_450 0.0969035097 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
10 Hb_083963_010 0.0987835889 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
11 Hb_004137_040 0.100417355 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
12 Hb_000815_050 0.1009650941 - - PREDICTED: expansin-A1 [Populus euphratica]
13 Hb_000742_070 0.101589788 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
14 Hb_017110_030 0.1035078104 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
15 Hb_004202_020 0.1047914056 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000103_200 0.1067836689 - - calmodulin binding protein, putative [Ricinus communis]
17 Hb_010577_020 0.1083672203 - - -
18 Hb_000230_300 0.109647671 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
19 Hb_004079_070 0.1098567135 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
20 Hb_000057_090 0.1108001427 - - hypothetical protein RCOM_1494490 [Ricinus communis]

Gene co-expression network

sample Hb_001956_130 Hb_001956_130 Hb_002221_060 Hb_002221_060 Hb_001956_130--Hb_002221_060 Hb_000816_140 Hb_000816_140 Hb_001956_130--Hb_000816_140 Hb_000003_380 Hb_000003_380 Hb_001956_130--Hb_000003_380 Hb_010883_170 Hb_010883_170 Hb_001956_130--Hb_010883_170 Hb_012653_050 Hb_012653_050 Hb_001956_130--Hb_012653_050 Hb_000358_260 Hb_000358_260 Hb_001956_130--Hb_000358_260 Hb_002221_060--Hb_000003_380 Hb_000230_300 Hb_000230_300 Hb_002221_060--Hb_000230_300 Hb_004137_040 Hb_004137_040 Hb_002221_060--Hb_004137_040 Hb_000483_450 Hb_000483_450 Hb_002221_060--Hb_000483_450 Hb_000103_200 Hb_000103_200 Hb_002221_060--Hb_000103_200 Hb_000928_030 Hb_000928_030 Hb_002221_060--Hb_000928_030 Hb_000816_140--Hb_010883_170 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_006922_120 Hb_006922_120 Hb_000816_140--Hb_006922_120 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_000003_380--Hb_000230_300 Hb_000003_380--Hb_004137_040 Hb_000003_380--Hb_000483_450 Hb_003376_020 Hb_003376_020 Hb_000003_380--Hb_003376_020 Hb_000003_380--Hb_000928_030 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_010883_170--Hb_002221_060 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010 Hb_000103_450 Hb_000103_450 Hb_012653_050--Hb_000103_450 Hb_012653_050--Hb_000483_450 Hb_012653_050--Hb_004202_020 Hb_012653_050--Hb_000815_050 Hb_010577_020 Hb_010577_020 Hb_000358_260--Hb_010577_020 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_005833_010 Hb_005833_010 Hb_000358_260--Hb_005833_010 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.272805 9.8907 15.8604 0 0.195665
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0390144 0.0613802 0 0.0122868 8.20811

CAGE analysis