Hb_002200_030

Information

Type -
Description -
Location Contig2200: 32981-36494
Sequence    

Annotation

kegg
ID rcu:RCOM_0137690
description Brassinosteroid LRR receptor kinase precursor, putative (EC:2.7.11.30 1.3.1.74)
nr
ID XP_002526147.1
description Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
swissprot
ID C0LGV1
description LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1
trembl
ID B9SJH8
description Brassinosteroid LRR receptor kinase, putative OS=Ricinus communis GN=RCOM_0137690 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lrr receptor-like serine threonine-protein kinase rch1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002200_030 0.0 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
2 Hb_005656_120 0.088613184 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
3 Hb_128986_010 0.1002825376 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003417_050 0.1015529956 - - ankyrin repeat-containing protein, putative [Ricinus communis]
5 Hb_002062_010 0.105413783 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
6 Hb_006922_120 0.1074088145 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_000392_350 0.1080942078 - - zinc finger protein, putative [Ricinus communis]
8 Hb_001278_120 0.1104673525 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
9 Hb_004459_010 0.1126882859 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
10 Hb_000326_120 0.116490229 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
11 Hb_009023_010 0.1176030861 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
12 Hb_000103_200 0.1194341105 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_001048_010 0.1196706555 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
14 Hb_149694_010 0.120546918 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
15 Hb_000017_180 0.1209427099 - - hypothetical protein JCGZ_20551 [Jatropha curcas]
16 Hb_003723_050 0.1209704874 - - conserved hypothetical protein [Ricinus communis]
17 Hb_143629_170 0.1216371438 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
18 Hb_010172_040 0.1220554013 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
19 Hb_002119_100 0.1223393741 - - cytochrome B561, putative [Ricinus communis]
20 Hb_005269_060 0.1228027632 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]

Gene co-expression network

sample Hb_002200_030 Hb_002200_030 Hb_005656_120 Hb_005656_120 Hb_002200_030--Hb_005656_120 Hb_128986_010 Hb_128986_010 Hb_002200_030--Hb_128986_010 Hb_003417_050 Hb_003417_050 Hb_002200_030--Hb_003417_050 Hb_002062_010 Hb_002062_010 Hb_002200_030--Hb_002062_010 Hb_006922_120 Hb_006922_120 Hb_002200_030--Hb_006922_120 Hb_000392_350 Hb_000392_350 Hb_002200_030--Hb_000392_350 Hb_005656_120--Hb_002062_010 Hb_005656_120--Hb_003417_050 Hb_005656_120--Hb_128986_010 Hb_000017_180 Hb_000017_180 Hb_005656_120--Hb_000017_180 Hb_015561_010 Hb_015561_010 Hb_005656_120--Hb_015561_010 Hb_007163_110 Hb_007163_110 Hb_005656_120--Hb_007163_110 Hb_128986_010--Hb_002062_010 Hb_128986_010--Hb_003417_050 Hb_143629_170 Hb_143629_170 Hb_128986_010--Hb_143629_170 Hb_001278_120 Hb_001278_120 Hb_128986_010--Hb_001278_120 Hb_007483_090 Hb_007483_090 Hb_128986_010--Hb_007483_090 Hb_003417_050--Hb_007483_090 Hb_003417_050--Hb_002062_010 Hb_002119_100 Hb_002119_100 Hb_003417_050--Hb_002119_100 Hb_003417_050--Hb_143629_170 Hb_002062_010--Hb_015561_010 Hb_002062_010--Hb_000017_180 Hb_002062_010--Hb_002119_100 Hb_006977_010 Hb_006977_010 Hb_006922_120--Hb_006977_010 Hb_007113_060 Hb_007113_060 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_000816_140 Hb_000816_140 Hb_006922_120--Hb_000816_140 Hb_005440_040 Hb_005440_040 Hb_006922_120--Hb_005440_040 Hb_010883_170 Hb_010883_170 Hb_006922_120--Hb_010883_170 Hb_000421_040 Hb_000421_040 Hb_000392_350--Hb_000421_040 Hb_010172_040 Hb_010172_040 Hb_000392_350--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000392_350--Hb_000707_090 Hb_061700_010 Hb_061700_010 Hb_000392_350--Hb_061700_010 Hb_001357_290 Hb_001357_290 Hb_000392_350--Hb_001357_290 Hb_002809_180 Hb_002809_180 Hb_000392_350--Hb_002809_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112979 0.644351 5.80257 16.4567 0.0588811 0.0545204
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.433258 0 0.0638997 11.1368

CAGE analysis