Hb_000392_350

Information

Type -
Description -
Location Contig392: 295192-295827
Sequence    

Annotation

kegg
ID rcu:RCOM_1514560
description zinc finger protein, putative
nr
ID XP_002511546.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9R971
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1514560 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39277: 295238-295483
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_350 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000421_040 0.0811384988 - - Peptide transporter, putative [Ricinus communis]
3 Hb_010172_040 0.0816328418 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
4 Hb_000707_090 0.0877870789 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
5 Hb_061700_010 0.0943820496 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
6 Hb_001357_290 0.094796104 - - PREDICTED: uncharacterized protein LOC105632986 [Jatropha curcas]
7 Hb_002809_180 0.0949410936 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
8 Hb_000172_270 0.0953673641 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
9 Hb_000343_070 0.0956405699 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
10 Hb_061256_020 0.0979068721 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
11 Hb_000326_120 0.1020897838 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
12 Hb_006895_010 0.102611572 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
13 Hb_015807_130 0.103362587 - - PREDICTED: kinesin-3 isoform X1 [Jatropha curcas]
14 Hb_000557_080 0.1036136638 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001289_040 0.1042696367 - - NDR1/HIN1-like 1 [Theobroma cacao]
16 Hb_001278_120 0.1047923773 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
17 Hb_011344_040 0.1065432457 - - PREDICTED: 21 kDa protein [Jatropha curcas]
18 Hb_001048_010 0.107760659 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
19 Hb_002200_030 0.1080942078 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
20 Hb_004459_010 0.1088815747 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]

Gene co-expression network

sample Hb_000392_350 Hb_000392_350 Hb_000421_040 Hb_000421_040 Hb_000392_350--Hb_000421_040 Hb_010172_040 Hb_010172_040 Hb_000392_350--Hb_010172_040 Hb_000707_090 Hb_000707_090 Hb_000392_350--Hb_000707_090 Hb_061700_010 Hb_061700_010 Hb_000392_350--Hb_061700_010 Hb_001357_290 Hb_001357_290 Hb_000392_350--Hb_001357_290 Hb_002809_180 Hb_002809_180 Hb_000392_350--Hb_002809_180 Hb_000421_040--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_000421_040--Hb_000557_080 Hb_000421_040--Hb_061700_010 Hb_001289_040 Hb_001289_040 Hb_000421_040--Hb_001289_040 Hb_000421_040--Hb_010172_040 Hb_000172_270 Hb_000172_270 Hb_000421_040--Hb_000172_270 Hb_010172_040--Hb_002809_180 Hb_000343_070 Hb_000343_070 Hb_010172_040--Hb_000343_070 Hb_010172_040--Hb_000172_270 Hb_010172_040--Hb_000707_090 Hb_001278_120 Hb_001278_120 Hb_010172_040--Hb_001278_120 Hb_000707_090--Hb_000557_080 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_000707_090--Hb_001289_040 Hb_000707_090--Hb_000343_070 Hb_006895_010 Hb_006895_010 Hb_000707_090--Hb_006895_010 Hb_108090_010 Hb_108090_010 Hb_061700_010--Hb_108090_010 Hb_142204_010 Hb_142204_010 Hb_061700_010--Hb_142204_010 Hb_061700_010--Hb_000172_270 Hb_061700_010--Hb_000557_080 Hb_061700_010--Hb_000707_090 Hb_000227_360 Hb_000227_360 Hb_001357_290--Hb_000227_360 Hb_011344_040 Hb_011344_040 Hb_001357_290--Hb_011344_040 Hb_000130_250 Hb_000130_250 Hb_001357_290--Hb_000130_250 Hb_000347_060 Hb_000347_060 Hb_001357_290--Hb_000347_060 Hb_001357_290--Hb_061700_010 Hb_001397_020 Hb_001397_020 Hb_002809_180--Hb_001397_020 Hb_001140_290 Hb_001140_290 Hb_002809_180--Hb_001140_290 Hb_003549_100 Hb_003549_100 Hb_002809_180--Hb_003549_100 Hb_010589_010 Hb_010589_010 Hb_002809_180--Hb_010589_010 Hb_003152_020 Hb_003152_020 Hb_002809_180--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.163246 2.63945 11.7165 0 0.0355878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0926988 0.145723 0 0.0595653 8.96264

CAGE analysis