Hb_000421_040

Information

Type -
Description -
Location Contig421: 27898-31636
Sequence    

Annotation

kegg
ID rcu:RCOM_0625060
description Peptide transporter, putative
nr
ID XP_002532264.1
description Peptide transporter, putative [Ricinus communis]
swissprot
ID Q9M1E2
description Protein NRT1/ PTR FAMILY 2.7 OS=Arabidopsis thaliana GN=NPF2.7 PE=1 SV=1
trembl
ID B9T1Z5
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_0625060 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41592: 28129-28613 , PASA_asmbl_41593: 28652-30865 , PASA_asmbl_41594: 31007-31313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000421_040 0.0 - - Peptide transporter, putative [Ricinus communis]
2 Hb_000707_090 0.0524128575 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
3 Hb_000557_080 0.0595245202 - - conserved hypothetical protein [Ricinus communis]
4 Hb_061700_010 0.0596107671 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
5 Hb_001289_040 0.0612127968 - - NDR1/HIN1-like 1 [Theobroma cacao]
6 Hb_010172_040 0.0642225186 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
7 Hb_000172_270 0.0652130289 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
8 Hb_006895_010 0.070230104 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
9 Hb_094439_040 0.0746651102 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
10 Hb_000343_070 0.0747007376 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
11 Hb_007382_110 0.0804400597 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
12 Hb_000392_350 0.0811384988 - - zinc finger protein, putative [Ricinus communis]
13 Hb_001048_010 0.0830689667 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 7 [Jatropha curcas]
14 Hb_061256_020 0.0873353846 - - PREDICTED: UPF0392 protein RCOM_0530710 [Jatropha curcas]
15 Hb_142204_010 0.087865823 - - pyruvate decarboxylase [Saccharum officinarum]
16 Hb_000485_100 0.0883108766 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
17 Hb_001278_120 0.089043628 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
18 Hb_108090_010 0.0897159439 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004459_010 0.0903191804 - - PREDICTED: phospholipase A1-IIgamma-like [Jatropha curcas]
20 Hb_002809_180 0.0916579461 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]

Gene co-expression network

sample Hb_000421_040 Hb_000421_040 Hb_000707_090 Hb_000707_090 Hb_000421_040--Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_000421_040--Hb_000557_080 Hb_061700_010 Hb_061700_010 Hb_000421_040--Hb_061700_010 Hb_001289_040 Hb_001289_040 Hb_000421_040--Hb_001289_040 Hb_010172_040 Hb_010172_040 Hb_000421_040--Hb_010172_040 Hb_000172_270 Hb_000172_270 Hb_000421_040--Hb_000172_270 Hb_000707_090--Hb_000557_080 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_000707_090--Hb_001289_040 Hb_000343_070 Hb_000343_070 Hb_000707_090--Hb_000343_070 Hb_006895_010 Hb_006895_010 Hb_000707_090--Hb_006895_010 Hb_000557_080--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_000557_080--Hb_094439_040 Hb_064396_020 Hb_064396_020 Hb_000557_080--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010 Hb_108090_010 Hb_108090_010 Hb_061700_010--Hb_108090_010 Hb_061700_010--Hb_142204_010 Hb_061700_010--Hb_000172_270 Hb_061700_010--Hb_000557_080 Hb_061700_010--Hb_000707_090 Hb_001289_040--Hb_094439_040 Hb_001289_040--Hb_077027_010 Hb_001289_040--Hb_006895_010 Hb_001289_040--Hb_064396_020 Hb_002809_180 Hb_002809_180 Hb_010172_040--Hb_002809_180 Hb_010172_040--Hb_000343_070 Hb_010172_040--Hb_000172_270 Hb_010172_040--Hb_000707_090 Hb_001278_120 Hb_001278_120 Hb_010172_040--Hb_001278_120 Hb_138977_010 Hb_138977_010 Hb_000172_270--Hb_138977_010 Hb_000172_270--Hb_001289_040 Hb_000172_270--Hb_002809_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0235986 0.649769 2.77948 0 0.0116609
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.14523

CAGE analysis