Hb_000707_090

Information

Type -
Description -
Location Contig707: 167853-171145
Sequence    

Annotation

kegg
ID rcu:RCOM_2046980
description Peptide transporter, putative
nr
ID XP_012087983.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
swissprot
ID Q9M331
description Protein NRT1/ PTR FAMILY 5.7 OS=Arabidopsis thaliana GN=NPF5.7 PE=2 SV=2
trembl
ID B9T755
description Peptide transporter, putative OS=Ricinus communis GN=RCOM_2046980 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein nrt1 ptr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55149: 169828-170695
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_090 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
2 Hb_000557_080 0.0521684611 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000421_040 0.0524128575 - - Peptide transporter, putative [Ricinus communis]
4 Hb_007382_110 0.0598369519 - - PREDICTED: bidirectional sugar transporter N3 [Jatropha curcas]
5 Hb_001289_040 0.0627202629 - - NDR1/HIN1-like 1 [Theobroma cacao]
6 Hb_000343_070 0.0657560927 - - hypothetical protein JCGZ_06265 [Jatropha curcas]
7 Hb_006895_010 0.0660732851 - - PREDICTED: secologanin synthase-like [Citrus sinensis]
8 Hb_010172_040 0.0696080115 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
9 Hb_061700_010 0.0710992427 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
10 Hb_000485_100 0.0760356833 - - PREDICTED: putative UPF0481 protein At3g02645 [Populus euphratica]
11 Hb_094439_040 0.0761565154 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]
12 Hb_142204_010 0.0777218554 - - pyruvate decarboxylase [Saccharum officinarum]
13 Hb_024723_010 0.082020461 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
14 Hb_000326_120 0.0869051542 transcription factor TF Family: MYB-related transcription factor, putative [Ricinus communis]
15 Hb_001278_120 0.0871523225 - - PREDICTED: reticulon-like protein B14 [Jatropha curcas]
16 Hb_000392_350 0.0877870789 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000172_270 0.0880280554 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
18 Hb_000111_490 0.0924364332 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005532_080 0.0943377879 - - PREDICTED: heparanase-like protein 2 [Jatropha curcas]
20 Hb_002391_010 0.0954486229 - - PREDICTED: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_000707_090 Hb_000707_090 Hb_000557_080 Hb_000557_080 Hb_000707_090--Hb_000557_080 Hb_000421_040 Hb_000421_040 Hb_000707_090--Hb_000421_040 Hb_007382_110 Hb_007382_110 Hb_000707_090--Hb_007382_110 Hb_001289_040 Hb_001289_040 Hb_000707_090--Hb_001289_040 Hb_000343_070 Hb_000343_070 Hb_000707_090--Hb_000343_070 Hb_006895_010 Hb_006895_010 Hb_000707_090--Hb_006895_010 Hb_000557_080--Hb_001289_040 Hb_094439_040 Hb_094439_040 Hb_000557_080--Hb_094439_040 Hb_064396_020 Hb_064396_020 Hb_000557_080--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_000557_080--Hb_077027_010 Hb_142204_010 Hb_142204_010 Hb_000557_080--Hb_142204_010 Hb_000421_040--Hb_000557_080 Hb_061700_010 Hb_061700_010 Hb_000421_040--Hb_061700_010 Hb_000421_040--Hb_001289_040 Hb_010172_040 Hb_010172_040 Hb_000421_040--Hb_010172_040 Hb_000172_270 Hb_000172_270 Hb_000421_040--Hb_000172_270 Hb_005532_080 Hb_005532_080 Hb_007382_110--Hb_005532_080 Hb_007382_110--Hb_142204_010 Hb_185608_010 Hb_185608_010 Hb_007382_110--Hb_185608_010 Hb_007382_110--Hb_000557_080 Hb_166360_010 Hb_166360_010 Hb_007382_110--Hb_166360_010 Hb_001289_040--Hb_094439_040 Hb_001289_040--Hb_077027_010 Hb_001289_040--Hb_006895_010 Hb_001289_040--Hb_064396_020 Hb_001278_120 Hb_001278_120 Hb_000343_070--Hb_001278_120 Hb_004943_020 Hb_004943_020 Hb_000343_070--Hb_004943_020 Hb_005269_060 Hb_005269_060 Hb_000343_070--Hb_005269_060 Hb_049955_010 Hb_049955_010 Hb_000343_070--Hb_049955_010 Hb_000343_070--Hb_010172_040 Hb_006895_010--Hb_094439_040 Hb_000485_100 Hb_000485_100 Hb_006895_010--Hb_000485_100 Hb_006895_010--Hb_000557_080 Hb_002391_010 Hb_002391_010 Hb_006895_010--Hb_002391_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0140093 0.0298607 2.62309 10.4276 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0256725 0 0 0 7.69838

CAGE analysis