Hb_000920_230

Information

Type -
Description -
Location Contig920: 127849-131610
Sequence    

Annotation

kegg
ID rcu:RCOM_1452710
description DNA binding protein, putative
nr
ID XP_002513070.1
description DNA binding protein, putative [Ricinus communis]
swissprot
ID Q8L7A4
description Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1
trembl
ID B9RGB8
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1452710 PE=4 SV=1
Gene Ontology
ID GO:0005096
description probable adp-ribosylation factor gtpase-activating protein agd11 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000920_230 0.0 - - DNA binding protein, putative [Ricinus communis]
2 Hb_000959_320 0.1458168969 - - PREDICTED: uncharacterized protein LOC105778325 [Gossypium raimondii]
3 Hb_000907_160 0.1520396147 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_002498_030 0.1748537817 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003050_020 0.1783993524 - - glycosyl hydrolase family 17 family protein [Populus trichocarpa]
6 Hb_017439_010 0.1824566304 - - putative actin-97 protein [Linum usitatissimum]
7 Hb_002592_020 0.1938482945 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
8 Hb_000120_940 0.1984498299 - - PREDICTED: phosphoserine aminotransferase 1, chloroplastic-like [Jatropha curcas]
9 Hb_000853_180 0.1986653165 - - kinesin heavy chain, putative [Ricinus communis]
10 Hb_003583_010 0.2009033124 - - PREDICTED: patatin-like protein 6 [Jatropha curcas]
11 Hb_000003_210 0.2064701404 - - PREDICTED: GEM-like protein 4 [Jatropha curcas]
12 Hb_006157_010 0.2083446383 - - PREDICTED: endoglucanase 5 [Jatropha curcas]
13 Hb_000190_170 0.210419347 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
14 Hb_015941_010 0.2114013725 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
15 Hb_000307_040 0.2138159467 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
16 Hb_001863_010 0.2175810347 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
17 Hb_001102_160 0.2186129871 - - PREDICTED: galacturonokinase [Jatropha curcas]
18 Hb_000920_160 0.2196599102 - - annexin [Manihot esculenta]
19 Hb_003894_050 0.2224328768 - - hypothetical protein JCGZ_14524 [Jatropha curcas]
20 Hb_001195_720 0.2241214014 - - PREDICTED: probable calcium-binding protein CML41 [Jatropha curcas]

Gene co-expression network

sample Hb_000920_230 Hb_000920_230 Hb_000959_320 Hb_000959_320 Hb_000920_230--Hb_000959_320 Hb_000907_160 Hb_000907_160 Hb_000920_230--Hb_000907_160 Hb_002498_030 Hb_002498_030 Hb_000920_230--Hb_002498_030 Hb_003050_020 Hb_003050_020 Hb_000920_230--Hb_003050_020 Hb_017439_010 Hb_017439_010 Hb_000920_230--Hb_017439_010 Hb_002592_020 Hb_002592_020 Hb_000920_230--Hb_002592_020 Hb_000959_320--Hb_003050_020 Hb_003583_010 Hb_003583_010 Hb_000959_320--Hb_003583_010 Hb_000959_320--Hb_000907_160 Hb_000103_070 Hb_000103_070 Hb_000959_320--Hb_000103_070 Hb_000003_210 Hb_000003_210 Hb_000959_320--Hb_000003_210 Hb_000907_160--Hb_003050_020 Hb_000190_170 Hb_000190_170 Hb_000907_160--Hb_000190_170 Hb_000003_280 Hb_000003_280 Hb_000907_160--Hb_000003_280 Hb_003894_050 Hb_003894_050 Hb_000907_160--Hb_003894_050 Hb_053264_010 Hb_053264_010 Hb_000907_160--Hb_053264_010 Hb_002498_030--Hb_017439_010 Hb_000328_010 Hb_000328_010 Hb_002498_030--Hb_000328_010 Hb_001102_160 Hb_001102_160 Hb_002498_030--Hb_001102_160 Hb_003408_010 Hb_003408_010 Hb_002498_030--Hb_003408_010 Hb_034726_010 Hb_034726_010 Hb_002498_030--Hb_034726_010 Hb_000011_310 Hb_000011_310 Hb_002498_030--Hb_000011_310 Hb_000735_020 Hb_000735_020 Hb_003050_020--Hb_000735_020 Hb_116647_010 Hb_116647_010 Hb_003050_020--Hb_116647_010 Hb_003050_020--Hb_000003_280 Hb_007811_020 Hb_007811_020 Hb_003050_020--Hb_007811_020 Hb_001401_040 Hb_001401_040 Hb_017439_010--Hb_001401_040 Hb_003055_090 Hb_003055_090 Hb_017439_010--Hb_003055_090 Hb_001268_160 Hb_001268_160 Hb_017439_010--Hb_001268_160 Hb_010889_010 Hb_010889_010 Hb_017439_010--Hb_010889_010 Hb_017439_010--Hb_000328_010 Hb_002592_020--Hb_003583_010 Hb_000510_280 Hb_000510_280 Hb_002592_020--Hb_000510_280 Hb_002592_020--Hb_000959_320 Hb_005181_140 Hb_005181_140 Hb_002592_020--Hb_005181_140 Hb_007625_010 Hb_007625_010 Hb_002592_020--Hb_007625_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0213816 0.319638 0.652756 0.0129455 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0882674 0.0694442 0 0.0277003 0.194116

CAGE analysis