Hb_000510_280

Information

Type transcription factor
Description TF Family: AUX/IAA
Location Contig510: 278884-280480
Sequence    

Annotation

kegg
ID rcu:RCOM_0991820
description Auxin-induced protein 22E, putative
nr
ID XP_012092113.1
description PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
swissprot
ID O24542
description Auxin-induced protein 22D OS=Vigna radiata var. radiata GN=AUX22D PE=2 SV=1
trembl
ID A0A067JBZ9
description Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_21842 PE=3 SV=1
Gene Ontology
ID GO:0005634
description auxin-induced protein 22b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46306: 278921-279226
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_280 0.0 transcription factor TF Family: AUX/IAA PREDICTED: auxin-induced protein 22D-like [Jatropha curcas]
2 Hb_002968_050 0.16947989 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
3 Hb_002592_020 0.1744665404 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
4 Hb_000445_120 0.1926521485 - - ATP binding protein, putative [Ricinus communis]
5 Hb_000264_040 0.2055612865 - - sugar transporter, putative [Ricinus communis]
6 Hb_000094_170 0.2094064656 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
7 Hb_000438_120 0.2159286494 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
8 Hb_007625_010 0.2170452962 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004586_270 0.2178327681 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2 isoform X2 [Jatropha curcas]
10 Hb_006569_080 0.2185877485 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
11 Hb_010810_060 0.2197240181 - - sterol desaturase, putative [Ricinus communis]
12 Hb_003929_240 0.2197279509 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
13 Hb_168392_010 0.2227524081 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_000853_180 0.2236268133 - - kinesin heavy chain, putative [Ricinus communis]
15 Hb_001474_060 0.2260372512 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
16 Hb_000005_140 0.2260760918 transcription factor TF Family: C2H2 unknown [Populus trichocarpa]
17 Hb_002081_020 0.2263397898 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
18 Hb_004883_010 0.2276059612 - - hypothetical protein JCGZ_23144 [Jatropha curcas]
19 Hb_004545_010 0.2284123177 - - acyl carrier protein [Ricinus communis]
20 Hb_000189_440 0.2291253364 - - hypothetical protein JCGZ_23470 [Jatropha curcas]

Gene co-expression network

sample Hb_000510_280 Hb_000510_280 Hb_002968_050 Hb_002968_050 Hb_000510_280--Hb_002968_050 Hb_002592_020 Hb_002592_020 Hb_000510_280--Hb_002592_020 Hb_000445_120 Hb_000445_120 Hb_000510_280--Hb_000445_120 Hb_000264_040 Hb_000264_040 Hb_000510_280--Hb_000264_040 Hb_000094_170 Hb_000094_170 Hb_000510_280--Hb_000094_170 Hb_000438_120 Hb_000438_120 Hb_000510_280--Hb_000438_120 Hb_003261_010 Hb_003261_010 Hb_002968_050--Hb_003261_010 Hb_000200_360 Hb_000200_360 Hb_002968_050--Hb_000200_360 Hb_001959_100 Hb_001959_100 Hb_002968_050--Hb_001959_100 Hb_002968_050--Hb_000264_040 Hb_004586_270 Hb_004586_270 Hb_002968_050--Hb_004586_270 Hb_003583_010 Hb_003583_010 Hb_002592_020--Hb_003583_010 Hb_000959_320 Hb_000959_320 Hb_002592_020--Hb_000959_320 Hb_000920_230 Hb_000920_230 Hb_002592_020--Hb_000920_230 Hb_005181_140 Hb_005181_140 Hb_002592_020--Hb_005181_140 Hb_007625_010 Hb_007625_010 Hb_002592_020--Hb_007625_010 Hb_000445_120--Hb_000264_040 Hb_002886_010 Hb_002886_010 Hb_000445_120--Hb_002886_010 Hb_000189_440 Hb_000189_440 Hb_000445_120--Hb_000189_440 Hb_000805_010 Hb_000805_010 Hb_000445_120--Hb_000805_010 Hb_000649_040 Hb_000649_040 Hb_000445_120--Hb_000649_040 Hb_002759_050 Hb_002759_050 Hb_000445_120--Hb_002759_050 Hb_000264_040--Hb_002886_010 Hb_000264_040--Hb_002759_050 Hb_000301_040 Hb_000301_040 Hb_000264_040--Hb_000301_040 Hb_005730_060 Hb_005730_060 Hb_000264_040--Hb_005730_060 Hb_000264_040--Hb_000200_360 Hb_001001_070 Hb_001001_070 Hb_000094_170--Hb_001001_070 Hb_008762_010 Hb_008762_010 Hb_000094_170--Hb_008762_010 Hb_001789_100 Hb_001789_100 Hb_000094_170--Hb_001789_100 Hb_001141_250 Hb_001141_250 Hb_000094_170--Hb_001141_250 Hb_002081_020 Hb_002081_020 Hb_000094_170--Hb_002081_020 Hb_005914_120 Hb_005914_120 Hb_000094_170--Hb_005914_120 Hb_000107_350 Hb_000107_350 Hb_000438_120--Hb_000107_350 Hb_000438_120--Hb_000649_040 Hb_002759_070 Hb_002759_070 Hb_000438_120--Hb_002759_070 Hb_000808_150 Hb_000808_150 Hb_000438_120--Hb_000808_150 Hb_005976_010 Hb_005976_010 Hb_000438_120--Hb_005976_010 Hb_161396_010 Hb_161396_010 Hb_000438_120--Hb_161396_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.498529 0.410474 9.52966 24.666 0.692245 0.539626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.83723 5.46234 0.109637 0 23.2428

CAGE analysis