Hb_001789_100

Information

Type -
Description -
Location Contig1789: 120606-121337
Sequence    

Annotation

kegg
ID rcu:RCOM_1583120
description hypothetical protein
nr
ID XP_002513682.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIW3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1583120 PE=4 SV=1
Gene Ontology
ID GO:0005783
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17213: 120624-121453
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001789_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_019516_060 0.1210906905 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
3 Hb_006750_010 0.1261544212 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
4 Hb_003462_040 0.136758431 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
5 Hb_001001_070 0.146978245 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
6 Hb_003086_030 0.1472606923 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
7 Hb_025645_020 0.1491141962 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
8 Hb_002081_020 0.1492152228 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
9 Hb_000108_180 0.1529868992 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
10 Hb_003177_040 0.1532265233 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
11 Hb_000094_170 0.1553256151 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
12 Hb_000030_130 0.1556418988 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
13 Hb_000176_080 0.1578314727 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
14 Hb_000251_120 0.1594135242 - - O-acetyltransferase, putative [Ricinus communis]
15 Hb_001699_080 0.1596902981 - - unnamed protein product [Coffea canephora]
16 Hb_000820_110 0.16289297 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
17 Hb_000056_190 0.1649576357 - - hypothetical protein [Ricinus communis]
18 Hb_019516_070 0.1695226643 - - PREDICTED: uncharacterized protein LOC105634258 [Jatropha curcas]
19 Hb_002759_030 0.1701531042 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
20 Hb_008461_060 0.1713944314 - - hypothetical protein JCGZ_17379 [Jatropha curcas]

Gene co-expression network

sample Hb_001789_100 Hb_001789_100 Hb_019516_060 Hb_019516_060 Hb_001789_100--Hb_019516_060 Hb_006750_010 Hb_006750_010 Hb_001789_100--Hb_006750_010 Hb_003462_040 Hb_003462_040 Hb_001789_100--Hb_003462_040 Hb_001001_070 Hb_001001_070 Hb_001789_100--Hb_001001_070 Hb_003086_030 Hb_003086_030 Hb_001789_100--Hb_003086_030 Hb_025645_020 Hb_025645_020 Hb_001789_100--Hb_025645_020 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_000820_110 Hb_000820_110 Hb_019516_060--Hb_000820_110 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_019516_060--Hb_006750_010 Hb_006750_010--Hb_003462_040 Hb_028396_020 Hb_028396_020 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_003462_040--Hb_001369_010 Hb_003006_090 Hb_003006_090 Hb_003462_040--Hb_003006_090 Hb_003226_250 Hb_003226_250 Hb_003462_040--Hb_003226_250 Hb_001195_660 Hb_001195_660 Hb_003462_040--Hb_001195_660 Hb_000251_120 Hb_000251_120 Hb_001001_070--Hb_000251_120 Hb_008461_060 Hb_008461_060 Hb_001001_070--Hb_008461_060 Hb_000108_180 Hb_000108_180 Hb_001001_070--Hb_000108_180 Hb_003177_040 Hb_003177_040 Hb_001001_070--Hb_003177_040 Hb_002081_020 Hb_002081_020 Hb_001001_070--Hb_002081_020 Hb_002759_030 Hb_002759_030 Hb_001001_070--Hb_002759_030 Hb_000003_580 Hb_000003_580 Hb_003086_030--Hb_000003_580 Hb_003125_210 Hb_003125_210 Hb_003086_030--Hb_003125_210 Hb_002894_080 Hb_002894_080 Hb_003086_030--Hb_002894_080 Hb_003086_030--Hb_000030_130 Hb_003086_030--Hb_019516_060 Hb_000457_120 Hb_000457_120 Hb_003086_030--Hb_000457_120 Hb_025645_020--Hb_003177_040 Hb_000176_080 Hb_000176_080 Hb_025645_020--Hb_000176_080 Hb_025645_020--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_025645_020--Hb_150486_010 Hb_003623_040 Hb_003623_040 Hb_025645_020--Hb_003623_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.521699 3.14716 4.38725 19.4136 0.411096 0.949622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29311 0.358814 0.536163 0.170004 12.6042

CAGE analysis