Hb_003623_040

Information

Type -
Description -
Location Contig3623: 21949-25127
Sequence    

Annotation

kegg
ID pop:POPTR_0008s00710g
description POPTRDRAFT_720100; hypothetical protein
nr
ID XP_012090549.1
description PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
swissprot
ID Q5QQ56
description Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1
trembl
ID A0A067JR87
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26346 PE=4 SV=1
Gene Ontology
ID GO:0016020
description xylosyltransferase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37231: 23327-24724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_040 0.0 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
2 Hb_000176_080 0.0958881093 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
3 Hb_005183_130 0.1391419335 - - glycogenin, putative [Ricinus communis]
4 Hb_025645_020 0.1396733299 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
5 Hb_030565_050 0.1558965331 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
6 Hb_003554_040 0.1643906545 - - -
7 Hb_000108_180 0.172482696 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
8 Hb_150486_010 0.1762546923 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
9 Hb_000030_130 0.177965871 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_001214_040 0.1792941968 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
11 Hb_003647_110 0.179377107 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
12 Hb_002686_130 0.1900421444 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105650401 [Jatropha curcas]
13 Hb_001001_070 0.1956180115 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
14 Hb_000580_210 0.1965677783 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
15 Hb_000173_180 0.1975305522 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
16 Hb_000251_120 0.1977572811 - - O-acetyltransferase, putative [Ricinus communis]
17 Hb_001225_050 0.1980628855 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]
18 Hb_003177_040 0.1980877644 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_008762_010 0.201859263 - - dopamine beta-monooxygenase, putative [Ricinus communis]
20 Hb_003086_030 0.2065416599 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]

Gene co-expression network

sample Hb_003623_040 Hb_003623_040 Hb_000176_080 Hb_000176_080 Hb_003623_040--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_003623_040--Hb_005183_130 Hb_025645_020 Hb_025645_020 Hb_003623_040--Hb_025645_020 Hb_030565_050 Hb_030565_050 Hb_003623_040--Hb_030565_050 Hb_003554_040 Hb_003554_040 Hb_003623_040--Hb_003554_040 Hb_000108_180 Hb_000108_180 Hb_003623_040--Hb_000108_180 Hb_000176_080--Hb_005183_130 Hb_000176_080--Hb_000108_180 Hb_000176_080--Hb_025645_020 Hb_000030_130 Hb_000030_130 Hb_000176_080--Hb_000030_130 Hb_000251_120 Hb_000251_120 Hb_000176_080--Hb_000251_120 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_001001_070 Hb_001001_070 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070 Hb_003177_040 Hb_003177_040 Hb_025645_020--Hb_003177_040 Hb_025645_020--Hb_000108_180 Hb_150486_010 Hb_150486_010 Hb_025645_020--Hb_150486_010 Hb_001789_100 Hb_001789_100 Hb_025645_020--Hb_001789_100 Hb_014361_090 Hb_014361_090 Hb_030565_050--Hb_014361_090 Hb_004449_090 Hb_004449_090 Hb_030565_050--Hb_004449_090 Hb_000684_220 Hb_000684_220 Hb_030565_050--Hb_000684_220 Hb_005539_140 Hb_005539_140 Hb_030565_050--Hb_005539_140 Hb_030565_050--Hb_000176_080 Hb_000603_020 Hb_000603_020 Hb_030565_050--Hb_000603_020 Hb_000780_180 Hb_000780_180 Hb_003554_040--Hb_000780_180 Hb_003554_040--Hb_000176_080 Hb_003554_040--Hb_000030_130 Hb_000137_050 Hb_000137_050 Hb_003554_040--Hb_000137_050 Hb_002894_080 Hb_002894_080 Hb_003554_040--Hb_002894_080 Hb_003554_040--Hb_005183_130 Hb_000108_180--Hb_003177_040 Hb_000108_180--Hb_000251_120 Hb_000108_180--Hb_001001_070 Hb_001541_060 Hb_001541_060 Hb_000108_180--Hb_001541_060 Hb_000108_180--Hb_005183_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27052 3.68397 2.18327 29.2428 2.19806 1.25996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.433244 0.0524359 0.0491484 0.47131 11.6545

CAGE analysis