Hb_000780_180

Information

Type -
Description -
Location Contig780: 186316-186855
Sequence    

Annotation

kegg
ID rcu:RCOM_0483340
description hypothetical protein
nr
ID XP_012081523.1
description PREDICTED: uncharacterized protein LOC105641547 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K0Z9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000780_180 0.0 - - PREDICTED: uncharacterized protein LOC105641547 [Jatropha curcas]
2 Hb_003554_040 0.1262547807 - - -
3 Hb_000856_030 0.1414999898 - - ATP binding protein, putative [Ricinus communis]
4 Hb_000012_380 0.1445920908 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
5 Hb_029665_010 0.1564628149 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
6 Hb_001680_050 0.157888373 - - -
7 Hb_007579_030 0.158857141 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_000367_080 0.1601826807 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
9 Hb_001366_300 0.1602982944 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_001279_400 0.1603821236 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
11 Hb_000368_040 0.1610191801 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_001950_100 0.1627518588 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
13 Hb_000009_250 0.1643528988 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_000245_110 0.1657773556 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
15 Hb_001709_080 0.1660216897 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
16 Hb_000000_050 0.1673451848 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002894_080 0.1675052872 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000317_170 0.1676736804 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
19 Hb_000000_260 0.1715315119 - - PREDICTED: probable galacturonosyltransferase-like 1 [Jatropha curcas]
20 Hb_000137_050 0.1721466155 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000780_180 Hb_000780_180 Hb_003554_040 Hb_003554_040 Hb_000780_180--Hb_003554_040 Hb_000856_030 Hb_000856_030 Hb_000780_180--Hb_000856_030 Hb_000012_380 Hb_000012_380 Hb_000780_180--Hb_000012_380 Hb_029665_010 Hb_029665_010 Hb_000780_180--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000780_180--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000780_180--Hb_007579_030 Hb_000176_080 Hb_000176_080 Hb_003554_040--Hb_000176_080 Hb_000030_130 Hb_000030_130 Hb_003554_040--Hb_000030_130 Hb_000137_050 Hb_000137_050 Hb_003554_040--Hb_000137_050 Hb_002894_080 Hb_002894_080 Hb_003554_040--Hb_002894_080 Hb_005183_130 Hb_005183_130 Hb_003554_040--Hb_005183_130 Hb_000368_040 Hb_000368_040 Hb_000856_030--Hb_000368_040 Hb_000317_170 Hb_000317_170 Hb_000856_030--Hb_000317_170 Hb_000856_030--Hb_001680_050 Hb_000856_030--Hb_000137_050 Hb_000856_030--Hb_007579_030 Hb_000197_260 Hb_000197_260 Hb_000856_030--Hb_000197_260 Hb_026124_020 Hb_026124_020 Hb_000012_380--Hb_026124_020 Hb_000245_110 Hb_000245_110 Hb_000012_380--Hb_000245_110 Hb_148262_010 Hb_148262_010 Hb_000012_380--Hb_148262_010 Hb_003090_190 Hb_003090_190 Hb_000012_380--Hb_003090_190 Hb_042083_010 Hb_042083_010 Hb_000012_380--Hb_042083_010 Hb_000328_030 Hb_000328_030 Hb_000012_380--Hb_000328_030 Hb_029665_010--Hb_001680_050 Hb_029665_010--Hb_000197_260 Hb_029665_010--Hb_007579_030 Hb_029665_010--Hb_000368_040 Hb_005183_070 Hb_005183_070 Hb_029665_010--Hb_005183_070 Hb_001401_120 Hb_001401_120 Hb_029665_010--Hb_001401_120 Hb_001680_050--Hb_007579_030 Hb_001680_050--Hb_000317_170 Hb_001680_050--Hb_000368_040 Hb_001680_050--Hb_000197_260 Hb_007579_030--Hb_001401_120 Hb_001366_300 Hb_001366_300 Hb_007579_030--Hb_001366_300 Hb_029238_040 Hb_029238_040 Hb_007579_030--Hb_029238_040 Hb_007579_030--Hb_000197_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101711 1.23799 0.324351 4.35065 0.0512353 0.0909941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.186396 0 0.0769856 3.00967

CAGE analysis