Hb_003554_040

Information

Type -
Description -
Location Contig3554: 30874-34792
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003554_040 0.0 - - -
2 Hb_000780_180 0.1262547807 - - PREDICTED: uncharacterized protein LOC105641547 [Jatropha curcas]
3 Hb_000176_080 0.1429664215 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
4 Hb_000030_130 0.1432045194 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
5 Hb_000137_050 0.1510450052 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002894_080 0.1545642221 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005183_130 0.1550404393 - - glycogenin, putative [Ricinus communis]
8 Hb_000251_120 0.1552315291 - - O-acetyltransferase, putative [Ricinus communis]
9 Hb_000856_030 0.16119941 - - ATP binding protein, putative [Ricinus communis]
10 Hb_003086_030 0.1635585278 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
11 Hb_030565_050 0.1640503434 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
12 Hb_003623_040 0.1643906545 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
13 Hb_000928_200 0.1649411335 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
14 Hb_001001_070 0.1653125468 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
15 Hb_001279_400 0.1694804401 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
16 Hb_152914_010 0.1704307728 - - PREDICTED: polcalcin Syr v 3-like [Nicotiana sylvestris]
17 Hb_005539_140 0.1727934306 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
18 Hb_012395_250 0.1750426181 - - hypothetical protein RCOM_1217340 [Ricinus communis]
19 Hb_000367_080 0.1769891694 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
20 Hb_007101_070 0.1784365365 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]

Gene co-expression network

sample Hb_003554_040 Hb_003554_040 Hb_000780_180 Hb_000780_180 Hb_003554_040--Hb_000780_180 Hb_000176_080 Hb_000176_080 Hb_003554_040--Hb_000176_080 Hb_000030_130 Hb_000030_130 Hb_003554_040--Hb_000030_130 Hb_000137_050 Hb_000137_050 Hb_003554_040--Hb_000137_050 Hb_002894_080 Hb_002894_080 Hb_003554_040--Hb_002894_080 Hb_005183_130 Hb_005183_130 Hb_003554_040--Hb_005183_130 Hb_000856_030 Hb_000856_030 Hb_000780_180--Hb_000856_030 Hb_000012_380 Hb_000012_380 Hb_000780_180--Hb_000012_380 Hb_029665_010 Hb_029665_010 Hb_000780_180--Hb_029665_010 Hb_001680_050 Hb_001680_050 Hb_000780_180--Hb_001680_050 Hb_007579_030 Hb_007579_030 Hb_000780_180--Hb_007579_030 Hb_003623_040 Hb_003623_040 Hb_000176_080--Hb_003623_040 Hb_000176_080--Hb_005183_130 Hb_000108_180 Hb_000108_180 Hb_000176_080--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_000176_080--Hb_025645_020 Hb_000176_080--Hb_000030_130 Hb_000251_120 Hb_000251_120 Hb_000176_080--Hb_000251_120 Hb_019516_060 Hb_019516_060 Hb_000030_130--Hb_019516_060 Hb_174541_030 Hb_174541_030 Hb_000030_130--Hb_174541_030 Hb_003086_030 Hb_003086_030 Hb_000030_130--Hb_003086_030 Hb_000246_130 Hb_000246_130 Hb_000030_130--Hb_000246_130 Hb_000928_200 Hb_000928_200 Hb_000030_130--Hb_000928_200 Hb_030565_100 Hb_030565_100 Hb_000030_130--Hb_030565_100 Hb_152914_010 Hb_152914_010 Hb_000137_050--Hb_152914_010 Hb_000137_050--Hb_000856_030 Hb_000197_260 Hb_000197_260 Hb_000137_050--Hb_000197_260 Hb_004917_020 Hb_004917_020 Hb_000137_050--Hb_004917_020 Hb_180980_010 Hb_180980_010 Hb_000137_050--Hb_180980_010 Hb_000317_170 Hb_000317_170 Hb_000137_050--Hb_000317_170 Hb_000000_050 Hb_000000_050 Hb_002894_080--Hb_000000_050 Hb_001279_400 Hb_001279_400 Hb_002894_080--Hb_001279_400 Hb_002894_080--Hb_004917_020 Hb_000813_070 Hb_000813_070 Hb_002894_080--Hb_000813_070 Hb_002973_050 Hb_002973_050 Hb_002894_080--Hb_002973_050 Hb_001951_080 Hb_001951_080 Hb_002894_080--Hb_001951_080 Hb_004586_440 Hb_004586_440 Hb_005183_130--Hb_004586_440 Hb_000482_080 Hb_000482_080 Hb_005183_130--Hb_000482_080 Hb_000020_140 Hb_000020_140 Hb_005183_130--Hb_000020_140 Hb_001001_070 Hb_001001_070 Hb_005183_130--Hb_001001_070 Hb_000449_070 Hb_000449_070 Hb_005183_130--Hb_000449_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.244573 1.18161 0.495701 5.46049 0.249034 0.113816
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.229419 0 0.31073 2.62045

CAGE analysis