Hb_000012_380

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig12: 478895-480469
Sequence    

Annotation

kegg
ID rcu:RCOM_0797750
description hypothetical protein
nr
ID XP_002516455.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID B9RRT6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0797750 PE=4 SV=1
Gene Ontology
ID GO:0003676
description transcription factor myb1r1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06030: 480244-480394
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_380 0.0 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
2 Hb_026124_020 0.0633191093 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
3 Hb_000245_110 0.0684629999 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
4 Hb_148262_010 0.0764804084 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003090_190 0.080499892 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
6 Hb_042083_010 0.0950163864 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
7 Hb_000328_030 0.0977998297 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
8 Hb_000165_260 0.0987991389 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
9 Hb_001366_300 0.1015690508 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
10 Hb_007579_030 0.1035086225 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001709_080 0.1037338502 transcription factor TF Family: NAC NAC domain-containing protein, putative [Ricinus communis]
12 Hb_000009_250 0.1059451477 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
13 Hb_001401_120 0.1062683262 - - hypothetical protein JCGZ_04273 [Jatropha curcas]
14 Hb_015807_090 0.1074424051 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_001377_230 0.1123920491 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
16 Hb_005614_020 0.1125222968 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
17 Hb_008001_030 0.1129172234 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_000368_040 0.1173855709 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_000086_490 0.1181857052 - - cellulose synthase [Populus tomentosa]
20 Hb_000311_100 0.1182930375 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000012_380 Hb_000012_380 Hb_026124_020 Hb_026124_020 Hb_000012_380--Hb_026124_020 Hb_000245_110 Hb_000245_110 Hb_000012_380--Hb_000245_110 Hb_148262_010 Hb_148262_010 Hb_000012_380--Hb_148262_010 Hb_003090_190 Hb_003090_190 Hb_000012_380--Hb_003090_190 Hb_042083_010 Hb_042083_010 Hb_000012_380--Hb_042083_010 Hb_000328_030 Hb_000328_030 Hb_000012_380--Hb_000328_030 Hb_026124_020--Hb_148262_010 Hb_001401_120 Hb_001401_120 Hb_026124_020--Hb_001401_120 Hb_026124_020--Hb_000245_110 Hb_001366_300 Hb_001366_300 Hb_026124_020--Hb_001366_300 Hb_077774_010 Hb_077774_010 Hb_026124_020--Hb_077774_010 Hb_000245_110--Hb_003090_190 Hb_000245_110--Hb_042083_010 Hb_000245_110--Hb_000328_030 Hb_005614_020 Hb_005614_020 Hb_000245_110--Hb_005614_020 Hb_148262_010--Hb_001401_120 Hb_009117_020 Hb_009117_020 Hb_148262_010--Hb_009117_020 Hb_148262_010--Hb_000245_110 Hb_007579_030 Hb_007579_030 Hb_148262_010--Hb_007579_030 Hb_000165_260 Hb_000165_260 Hb_003090_190--Hb_000165_260 Hb_003090_190--Hb_000328_030 Hb_000311_100 Hb_000311_100 Hb_003090_190--Hb_000311_100 Hb_015807_090 Hb_015807_090 Hb_003090_190--Hb_015807_090 Hb_042083_010--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_042083_010--Hb_000086_490 Hb_042083_010--Hb_000328_030 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_005523_030 Hb_005523_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000328_030--Hb_000165_260 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.048 0.818718 10.8406 0 0.0264234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0423888 0 0.0682704 7.25763

CAGE analysis