Hb_000165_260

Information

Type -
Description -
Location Contig165: 219834-227161
Sequence    

Annotation

kegg
ID tcc:TCM_008415
description RING finger protein, putative
nr
ID XP_011036153.1
description PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
swissprot
ID Q9M9Y4
description E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana GN=DRIP1 PE=1 SV=2
trembl
ID A0A061E508
description RING finger protein, putative OS=Theobroma cacao GN=TCM_008415 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15210: 226235-226558 , PASA_asmbl_15211: 226597-226979 , PASA_asmbl_15212: 227105-227309
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_260 0.0 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
2 Hb_003090_190 0.0465085428 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
3 Hb_000328_030 0.0519676366 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
4 Hb_000311_100 0.0591437768 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007227_030 0.0598489732 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
6 Hb_001712_030 0.0702800509 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
7 Hb_000086_490 0.0737956835 - - cellulose synthase [Populus tomentosa]
8 Hb_002311_010 0.0758186899 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
9 Hb_001377_220 0.0799266187 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_002078_180 0.0802229375 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
11 Hb_001377_230 0.0821648809 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
12 Hb_001935_060 0.0825928508 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_015807_090 0.0840089159 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
14 Hb_005523_030 0.0873490048 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_038927_020 0.0894914253 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
16 Hb_001366_360 0.0896705154 - - catalytic, putative [Ricinus communis]
17 Hb_008001_030 0.0906186175 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
18 Hb_042083_010 0.0911100259 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
19 Hb_005827_020 0.0924982117 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
20 Hb_000245_110 0.0929361795 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]

Gene co-expression network

sample Hb_000165_260 Hb_000165_260 Hb_003090_190 Hb_003090_190 Hb_000165_260--Hb_003090_190 Hb_000328_030 Hb_000328_030 Hb_000165_260--Hb_000328_030 Hb_000311_100 Hb_000311_100 Hb_000165_260--Hb_000311_100 Hb_007227_030 Hb_007227_030 Hb_000165_260--Hb_007227_030 Hb_001712_030 Hb_001712_030 Hb_000165_260--Hb_001712_030 Hb_000086_490 Hb_000086_490 Hb_000165_260--Hb_000086_490 Hb_003090_190--Hb_000328_030 Hb_000245_110 Hb_000245_110 Hb_003090_190--Hb_000245_110 Hb_003090_190--Hb_000311_100 Hb_000012_380 Hb_000012_380 Hb_003090_190--Hb_000012_380 Hb_015807_090 Hb_015807_090 Hb_003090_190--Hb_015807_090 Hb_000328_030--Hb_000086_490 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_042083_010 Hb_042083_010 Hb_000328_030--Hb_042083_010 Hb_005523_030 Hb_005523_030 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_005827_020 Hb_005827_020 Hb_000311_100--Hb_005827_020 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_008001_030 Hb_008001_030 Hb_000311_100--Hb_008001_030 Hb_007227_030--Hb_000328_030 Hb_002311_010 Hb_002311_010 Hb_007227_030--Hb_002311_010 Hb_007227_030--Hb_001712_030 Hb_007227_030--Hb_003090_190 Hb_001366_360 Hb_001366_360 Hb_007227_030--Hb_001366_360 Hb_000462_040 Hb_000462_040 Hb_001712_030--Hb_000462_040 Hb_038927_020 Hb_038927_020 Hb_001712_030--Hb_038927_020 Hb_001712_030--Hb_002311_010 Hb_007281_010 Hb_007281_010 Hb_001712_030--Hb_007281_010 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_000086_490--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_000086_490--Hb_001051_060 Hb_002078_180 Hb_002078_180 Hb_000086_490--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.313591 0.267971 3.14501 0 0.0170901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0140183 2.66386

CAGE analysis