Hb_001366_360

Information

Type -
Description -
Location Contig1366: 294239-296147
Sequence    

Annotation

kegg
ID rcu:RCOM_1342600
description catalytic, putative
nr
ID XP_002515158.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q09893
description Uncharacterized protein C24B11.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC24B11.05 PE=3 SV=1
trembl
ID B9RN19
description Catalytic, putative OS=Ricinus communis GN=RCOM_1342600 PE=4 SV=1
Gene Ontology
ID GO:0016787
description haloacid dehalogenase-like hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10105: 294379-296126 , PASA_asmbl_10106: 294379-296126
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001366_360 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000020_180 0.0678661085 - - laccase, putative [Ricinus communis]
3 Hb_008001_030 0.0808392019 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
4 Hb_007227_030 0.0834016187 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
5 Hb_000165_260 0.0896705154 - - PREDICTED: uncharacterized protein LOC105133752 isoform X2 [Populus euphratica]
6 Hb_000311_100 0.0972658417 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005827_020 0.097968878 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g49770 [Populus euphratica]
8 Hb_003090_190 0.1002205473 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
9 Hb_000328_030 0.1078586517 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
10 Hb_001712_030 0.1079796194 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
11 Hb_022092_070 0.1090454052 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.5 [Jatropha curcas]
12 Hb_000462_040 0.1115684834 - - ATSMC2, putative [Ricinus communis]
13 Hb_000012_380 0.1184989258 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
14 Hb_000245_110 0.1199620719 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
15 Hb_001377_230 0.1202113676 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
16 Hb_001186_040 0.1204034289 - - Peroxidase 3 precursor, putative [Ricinus communis]
17 Hb_005000_150 0.1266026276 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001514_050 0.1271448292 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
19 Hb_026124_020 0.1289347511 - - PREDICTED: uncharacterized protein LOC105644241 isoform X1 [Jatropha curcas]
20 Hb_000230_490 0.1304189963 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001366_360 Hb_001366_360 Hb_000020_180 Hb_000020_180 Hb_001366_360--Hb_000020_180 Hb_008001_030 Hb_008001_030 Hb_001366_360--Hb_008001_030 Hb_007227_030 Hb_007227_030 Hb_001366_360--Hb_007227_030 Hb_000165_260 Hb_000165_260 Hb_001366_360--Hb_000165_260 Hb_000311_100 Hb_000311_100 Hb_001366_360--Hb_000311_100 Hb_005827_020 Hb_005827_020 Hb_001366_360--Hb_005827_020 Hb_000020_180--Hb_008001_030 Hb_000020_180--Hb_005827_020 Hb_005018_030 Hb_005018_030 Hb_000020_180--Hb_005018_030 Hb_000020_180--Hb_007227_030 Hb_000020_180--Hb_000311_100 Hb_008001_030--Hb_000311_100 Hb_001712_030 Hb_001712_030 Hb_008001_030--Hb_001712_030 Hb_008001_030--Hb_005827_020 Hb_003090_190 Hb_003090_190 Hb_008001_030--Hb_003090_190 Hb_007227_030--Hb_000165_260 Hb_000328_030 Hb_000328_030 Hb_007227_030--Hb_000328_030 Hb_002311_010 Hb_002311_010 Hb_007227_030--Hb_002311_010 Hb_007227_030--Hb_001712_030 Hb_007227_030--Hb_003090_190 Hb_000165_260--Hb_003090_190 Hb_000165_260--Hb_000328_030 Hb_000165_260--Hb_000311_100 Hb_000165_260--Hb_001712_030 Hb_000086_490 Hb_000086_490 Hb_000165_260--Hb_000086_490 Hb_000311_100--Hb_005827_020 Hb_000311_100--Hb_001712_030 Hb_000311_100--Hb_000328_030 Hb_000311_100--Hb_003090_190 Hb_000462_040 Hb_000462_040 Hb_005827_020--Hb_000462_040 Hb_005827_020--Hb_001712_030 Hb_005827_020--Hb_000328_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0308163 4.487 2.11146 22.6901 0.123458 0.207971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0357787 25.2593

CAGE analysis