Hb_042083_010

Information

Type -
Description -
Location Contig42083: 22617-29685
Sequence    

Annotation

kegg
ID pop:POPTR_0011s07040g
description POPTRDRAFT_568682; hypothetical protein
nr
ID XP_012091811.1
description PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
swissprot
ID Q8LPK5
description Cellulose synthase A catalytic subunit 8 [UDP-forming] OS=Arabidopsis thaliana GN=CESA8 PE=1 SV=1
trembl
ID A0A067JEC8
description Cellulose synthase OS=Jatropha curcas GN=JCGZ_21594 PE=3 SV=1
Gene Ontology
ID GO:0005886
description cellulose synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41572: 22668-29931
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042083_010 0.0 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]
2 Hb_015807_090 0.0501818056 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
3 Hb_000086_490 0.0520375839 - - cellulose synthase [Populus tomentosa]
4 Hb_000328_030 0.0539761016 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
5 Hb_006065_030 0.0570850316 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
6 Hb_005523_030 0.0591645351 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
7 Hb_012633_020 0.0638588797 - - laccase, putative [Ricinus communis]
8 Hb_001377_230 0.0691151584 - - PREDICTED: uncharacterized protein LOC105135159 [Populus euphratica]
9 Hb_005614_020 0.0720332765 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Jatropha curcas]
10 Hb_001051_060 0.0736439543 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
11 Hb_003747_160 0.074085384 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000245_110 0.0763286796 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 12-like [Jatropha curcas]
13 Hb_000776_090 0.076367464 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
14 Hb_005686_040 0.0800099382 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000193_320 0.0800763319 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002750_030 0.0858687531 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
17 Hb_002078_180 0.0859930722 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
18 Hb_002499_030 0.0869268992 - - receptor-kinase, putative [Ricinus communis]
19 Hb_070771_010 0.0873811117 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
20 Hb_009476_080 0.0885852641 - - BnaA03g18920D [Brassica napus]

Gene co-expression network

sample Hb_042083_010 Hb_042083_010 Hb_015807_090 Hb_015807_090 Hb_042083_010--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_042083_010--Hb_000086_490 Hb_000328_030 Hb_000328_030 Hb_042083_010--Hb_000328_030 Hb_006065_030 Hb_006065_030 Hb_042083_010--Hb_006065_030 Hb_005523_030 Hb_005523_030 Hb_042083_010--Hb_005523_030 Hb_012633_020 Hb_012633_020 Hb_042083_010--Hb_012633_020 Hb_015807_090--Hb_000086_490 Hb_015807_090--Hb_005523_030 Hb_003747_160 Hb_003747_160 Hb_015807_090--Hb_003747_160 Hb_002078_180 Hb_002078_180 Hb_015807_090--Hb_002078_180 Hb_001051_060 Hb_001051_060 Hb_015807_090--Hb_001051_060 Hb_005686_040 Hb_005686_040 Hb_015807_090--Hb_005686_040 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000086_490--Hb_000328_030 Hb_000086_490--Hb_002078_180 Hb_001377_230 Hb_001377_230 Hb_000328_030--Hb_001377_230 Hb_000165_260 Hb_000165_260 Hb_000328_030--Hb_000165_260 Hb_000328_030--Hb_005523_030 Hb_000328_030--Hb_015807_090 Hb_006065_030--Hb_012633_020 Hb_006065_030--Hb_015807_090 Hb_002750_030 Hb_002750_030 Hb_006065_030--Hb_002750_030 Hb_006065_030--Hb_005523_030 Hb_006065_030--Hb_000086_490 Hb_005523_030--Hb_001051_060 Hb_005523_030--Hb_005686_040 Hb_000776_090 Hb_000776_090 Hb_005523_030--Hb_000776_090 Hb_005523_030--Hb_002078_180 Hb_001307_180 Hb_001307_180 Hb_012633_020--Hb_001307_180 Hb_003645_040 Hb_003645_040 Hb_012633_020--Hb_003645_040 Hb_070771_010 Hb_070771_010 Hb_012633_020--Hb_070771_010 Hb_011912_010 Hb_011912_010 Hb_012633_020--Hb_011912_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0483122 11.2127 5.04402 120.432 0.224175 0.0551705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.854388 72.1355

CAGE analysis