Hb_011912_010

Information

Type -
Description -
Location Contig11912: 23150-24478
Sequence    

Annotation

kegg
ID rcu:RCOM_1697100
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002522914.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID B9SA95
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_1697100 PE=3 SV=1
Gene Ontology
ID GO:0004190
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011912_010 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_001307_180 0.0283101239 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
3 Hb_000413_030 0.0401312083 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
4 Hb_070771_010 0.050489274 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
5 Hb_000037_150 0.0510507316 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
6 Hb_003645_040 0.0534484743 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
7 Hb_064047_020 0.0566088099 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
8 Hb_002660_180 0.0573746545 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004846_110 0.0611834099 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
10 Hb_000964_080 0.0613429531 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
11 Hb_000836_640 0.06275812 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
12 Hb_012633_020 0.0633665785 - - laccase, putative [Ricinus communis]
13 Hb_002750_030 0.0642426939 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
14 Hb_001477_050 0.0659936688 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
15 Hb_002085_060 0.0686088782 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000696_130 0.0719627447 - - nucleic acid binding protein, putative [Ricinus communis]
17 Hb_000422_090 0.0729125928 - - conserved hypothetical protein [Ricinus communis]
18 Hb_024074_030 0.0735398163 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
19 Hb_005056_040 0.074622033 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
20 Hb_001051_060 0.0752889308 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011912_010 Hb_011912_010 Hb_001307_180 Hb_001307_180 Hb_011912_010--Hb_001307_180 Hb_000413_030 Hb_000413_030 Hb_011912_010--Hb_000413_030 Hb_070771_010 Hb_070771_010 Hb_011912_010--Hb_070771_010 Hb_000037_150 Hb_000037_150 Hb_011912_010--Hb_000037_150 Hb_003645_040 Hb_003645_040 Hb_011912_010--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_011912_010--Hb_064047_020 Hb_001307_180--Hb_003645_040 Hb_012633_020 Hb_012633_020 Hb_001307_180--Hb_012633_020 Hb_001307_180--Hb_070771_010 Hb_002660_180 Hb_002660_180 Hb_001307_180--Hb_002660_180 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640 Hb_000413_030--Hb_064047_020 Hb_000964_080 Hb_000964_080 Hb_000413_030--Hb_000964_080 Hb_003376_060 Hb_003376_060 Hb_000413_030--Hb_003376_060 Hb_000413_030--Hb_000037_150 Hb_000413_030--Hb_001307_180 Hb_002085_060 Hb_002085_060 Hb_070771_010--Hb_002085_060 Hb_000339_060 Hb_000339_060 Hb_070771_010--Hb_000339_060 Hb_070771_010--Hb_003645_040 Hb_003638_020 Hb_003638_020 Hb_070771_010--Hb_003638_020 Hb_000037_150--Hb_002660_180 Hb_024074_030 Hb_024074_030 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_003645_040--Hb_002085_060 Hb_003645_040--Hb_012633_020 Hb_003645_040--Hb_064047_020 Hb_064047_020--Hb_002085_060 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_064047_020--Hb_070771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0945519 10.0254 12.7955 355.661 0.202227 0.16156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.18243 150.916

CAGE analysis