Hb_000037_150

Information

Type -
Description -
Location Contig37: 263002-263562
Sequence    

Annotation

kegg
ID pop:POPTR_0001s10120g
description POPTRDRAFT_709225; pathogenesis-related family protein
nr
ID XP_012086793.1
description PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
swissprot
ID P13240
description Disease resistance response protein 206 OS=Pisum sativum GN=PI206 PE=1 SV=2
trembl
ID B9GKB0
description Pathogenesis-related family protein OS=Populus trichocarpa GN=POPTR_0001s10120g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000037_150 0.0 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
2 Hb_011912_010 0.0510507316 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
3 Hb_002660_180 0.0526787744 - - conserved hypothetical protein [Ricinus communis]
4 Hb_024074_030 0.0561672639 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
5 Hb_001477_050 0.0570483421 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_004846_110 0.0595173453 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
7 Hb_000696_130 0.0599914795 - - nucleic acid binding protein, putative [Ricinus communis]
8 Hb_000413_030 0.0613716371 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
9 Hb_002636_170 0.0640811223 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
10 Hb_000964_080 0.0644144153 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]
11 Hb_001307_180 0.0655507207 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
12 Hb_005056_040 0.0679494798 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
13 Hb_000422_090 0.068168119 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000836_640 0.0771296109 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
15 Hb_006634_120 0.0804743894 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
16 Hb_033149_010 0.0812995761 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
17 Hb_010288_010 0.0813377489 - - Beta-glucosidase, putative [Ricinus communis]
18 Hb_019953_010 0.0830548165 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
19 Hb_005616_020 0.0884219399 - - kinase, putative [Ricinus communis]
20 Hb_002750_030 0.0905549589 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]

Gene co-expression network

sample Hb_000037_150 Hb_000037_150 Hb_011912_010 Hb_011912_010 Hb_000037_150--Hb_011912_010 Hb_002660_180 Hb_002660_180 Hb_000037_150--Hb_002660_180 Hb_024074_030 Hb_024074_030 Hb_000037_150--Hb_024074_030 Hb_001477_050 Hb_001477_050 Hb_000037_150--Hb_001477_050 Hb_004846_110 Hb_004846_110 Hb_000037_150--Hb_004846_110 Hb_000696_130 Hb_000696_130 Hb_000037_150--Hb_000696_130 Hb_001307_180 Hb_001307_180 Hb_011912_010--Hb_001307_180 Hb_000413_030 Hb_000413_030 Hb_011912_010--Hb_000413_030 Hb_070771_010 Hb_070771_010 Hb_011912_010--Hb_070771_010 Hb_003645_040 Hb_003645_040 Hb_011912_010--Hb_003645_040 Hb_064047_020 Hb_064047_020 Hb_011912_010--Hb_064047_020 Hb_002660_180--Hb_000696_130 Hb_002636_170 Hb_002636_170 Hb_002660_180--Hb_002636_170 Hb_002660_180--Hb_024074_030 Hb_002660_180--Hb_001307_180 Hb_000422_090 Hb_000422_090 Hb_002660_180--Hb_000422_090 Hb_024074_030--Hb_001477_050 Hb_024074_030--Hb_000696_130 Hb_024074_030--Hb_002636_170 Hb_024074_030--Hb_001307_180 Hb_005056_040 Hb_005056_040 Hb_001477_050--Hb_005056_040 Hb_000836_640 Hb_000836_640 Hb_001477_050--Hb_000836_640 Hb_002750_030 Hb_002750_030 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_000964_080 Hb_000964_080 Hb_004846_110--Hb_000964_080 Hb_004846_110--Hb_011912_010 Hb_004846_110--Hb_001307_180 Hb_004846_110--Hb_002660_180 Hb_004846_110--Hb_000413_030 Hb_000696_130--Hb_002636_170 Hb_000696_130--Hb_000422_090 Hb_019953_010 Hb_019953_010 Hb_000696_130--Hb_019953_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.68077 10.9486 296.711 0.141815 0.153343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.55568 127.048

CAGE analysis