Hb_000422_090

Information

Type -
Description -
Location Contig422: 112123-112758
Sequence    

Annotation

kegg
ID rcu:RCOM_1282660
description hypothetical protein
nr
ID XP_002523871.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SD02
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1282660 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein yls9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000422_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002636_170 0.0412349276 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
3 Hb_000696_130 0.0480762551 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002660_180 0.0562338403 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000684_190 0.0572647502 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
6 Hb_002734_020 0.0602161512 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]
7 Hb_001856_250 0.0621376131 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
8 Hb_000037_150 0.068168119 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
9 Hb_002785_020 0.0694709876 - - PREDICTED: laccase-4-like [Jatropha curcas]
10 Hb_000483_340 0.0706722853 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000645_230 0.072898314 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
12 Hb_011912_010 0.0729125928 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_003788_030 0.0732323129 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
14 Hb_004846_110 0.0741068747 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
15 Hb_004884_040 0.0746223162 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
16 Hb_000729_040 0.0771095171 - - xyloglucan endotransglucosylase/hydrolase protein 10 precursor [Populus trichocarpa]
17 Hb_001307_180 0.0779507007 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
18 Hb_000581_010 0.0788114465 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like [Jatropha curcas]
19 Hb_000487_350 0.0789017694 - - conserved hypothetical protein [Ricinus communis]
20 Hb_019953_010 0.0794940665 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]

Gene co-expression network

sample Hb_000422_090 Hb_000422_090 Hb_002636_170 Hb_002636_170 Hb_000422_090--Hb_002636_170 Hb_000696_130 Hb_000696_130 Hb_000422_090--Hb_000696_130 Hb_002660_180 Hb_002660_180 Hb_000422_090--Hb_002660_180 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_002734_020 Hb_002734_020 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250 Hb_002636_170--Hb_000696_130 Hb_002636_170--Hb_002660_180 Hb_019953_010 Hb_019953_010 Hb_002636_170--Hb_019953_010 Hb_000037_150 Hb_000037_150 Hb_002636_170--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_002636_170--Hb_024074_030 Hb_000696_130--Hb_002660_180 Hb_000696_130--Hb_000037_150 Hb_000696_130--Hb_024074_030 Hb_000696_130--Hb_019953_010 Hb_002660_180--Hb_024074_030 Hb_002660_180--Hb_000037_150 Hb_001307_180 Hb_001307_180 Hb_002660_180--Hb_001307_180 Hb_000645_230 Hb_000645_230 Hb_000684_190--Hb_000645_230 Hb_002785_020 Hb_002785_020 Hb_000684_190--Hb_002785_020 Hb_001935_200 Hb_001935_200 Hb_000684_190--Hb_001935_200 Hb_004884_040 Hb_004884_040 Hb_000684_190--Hb_004884_040 Hb_000684_190--Hb_002734_020 Hb_002734_020--Hb_004884_040 Hb_002734_020--Hb_001856_250 Hb_000483_340 Hb_000483_340 Hb_002734_020--Hb_000483_340 Hb_002734_020--Hb_002785_020 Hb_002734_020--Hb_000645_230 Hb_001856_250--Hb_000483_340 Hb_001856_250--Hb_004884_040 Hb_027577_010 Hb_027577_010 Hb_001856_250--Hb_027577_010 Hb_006651_020 Hb_006651_020 Hb_001856_250--Hb_006651_020 Hb_000729_040 Hb_000729_040 Hb_001856_250--Hb_000729_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10129 5.8744 12.8046 441.383 0.0402478 0.225685
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.416957 138.281

CAGE analysis