Hb_019953_010

Information

Type -
Description -
Location Contig19953: 2454-13542
Sequence    

Annotation

kegg
ID cic:CICLE_v10019877mg
description hypothetical protein
nr
ID XP_006441689.1
description hypothetical protein CICLE_v10019877mg [Citrus clementina]
swissprot
ID Q93ZR6
description O-acyltransferase WSD1 OS=Arabidopsis thaliana GN=WSD1 PE=2 SV=1
trembl
ID V4VPQ6
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10019877mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019953_010 0.0 - - hypothetical protein CICLE_v10019877mg [Citrus clementina]
2 Hb_033149_010 0.057592479 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
3 Hb_002636_170 0.0629902446 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
4 Hb_000594_010 0.0669476307 - - PREDICTED: lysine histidine transporter-like 6 isoform X3 [Populus euphratica]
5 Hb_000696_130 0.0713508369 - - nucleic acid binding protein, putative [Ricinus communis]
6 Hb_006634_120 0.0791577155 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
7 Hb_000422_090 0.0794940665 - - conserved hypothetical protein [Ricinus communis]
8 Hb_009164_010 0.0803608223 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
9 Hb_004030_040 0.0808922552 - - PREDICTED: protein NRT1/ PTR FAMILY 2.8 [Jatropha curcas]
10 Hb_002660_180 0.0809847618 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000037_150 0.0830548165 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
12 Hb_024074_030 0.0928683482 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
13 Hb_006651_020 0.0933531794 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
14 Hb_025107_010 0.0942402534 - - PREDICTED: alkaline/neutral invertase CINV2-like [Sesamum indicum]
15 Hb_005043_040 0.0956457555 - - hypothetical protein POPTR_0004s17180g [Populus trichocarpa]
16 Hb_000024_100 0.0956760752 - - PREDICTED: uncharacterized protein LOC105631348 [Jatropha curcas]
17 Hb_064445_040 0.0957136296 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]
18 Hb_004846_110 0.0992244835 - - hypothetical protein JCGZ_04591 [Jatropha curcas]
19 Hb_092655_010 0.0992385714 - - PREDICTED: uncharacterized protein LOC105650151 [Jatropha curcas]
20 Hb_002757_030 0.1014651406 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_019953_010 Hb_019953_010 Hb_033149_010 Hb_033149_010 Hb_019953_010--Hb_033149_010 Hb_002636_170 Hb_002636_170 Hb_019953_010--Hb_002636_170 Hb_000594_010 Hb_000594_010 Hb_019953_010--Hb_000594_010 Hb_000696_130 Hb_000696_130 Hb_019953_010--Hb_000696_130 Hb_006634_120 Hb_006634_120 Hb_019953_010--Hb_006634_120 Hb_000422_090 Hb_000422_090 Hb_019953_010--Hb_000422_090 Hb_003793_010 Hb_003793_010 Hb_033149_010--Hb_003793_010 Hb_103225_040 Hb_103225_040 Hb_033149_010--Hb_103225_040 Hb_000445_410 Hb_000445_410 Hb_033149_010--Hb_000445_410 Hb_000007_190 Hb_000007_190 Hb_033149_010--Hb_000007_190 Hb_152868_020 Hb_152868_020 Hb_033149_010--Hb_152868_020 Hb_002636_170--Hb_000696_130 Hb_002636_170--Hb_000422_090 Hb_002660_180 Hb_002660_180 Hb_002636_170--Hb_002660_180 Hb_000037_150 Hb_000037_150 Hb_002636_170--Hb_000037_150 Hb_024074_030 Hb_024074_030 Hb_002636_170--Hb_024074_030 Hb_009164_010 Hb_009164_010 Hb_000594_010--Hb_009164_010 Hb_092655_010 Hb_092655_010 Hb_000594_010--Hb_092655_010 Hb_000594_010--Hb_002636_170 Hb_000594_010--Hb_000696_130 Hb_025107_010 Hb_025107_010 Hb_000594_010--Hb_025107_010 Hb_000696_130--Hb_002660_180 Hb_000696_130--Hb_000422_090 Hb_000696_130--Hb_000037_150 Hb_000696_130--Hb_024074_030 Hb_064445_040 Hb_064445_040 Hb_006634_120--Hb_064445_040 Hb_006634_120--Hb_024074_030 Hb_010288_010 Hb_010288_010 Hb_006634_120--Hb_010288_010 Hb_006634_120--Hb_000007_190 Hb_000392_500 Hb_000392_500 Hb_006634_120--Hb_000392_500 Hb_000422_090--Hb_002660_180 Hb_000684_190 Hb_000684_190 Hb_000422_090--Hb_000684_190 Hb_002734_020 Hb_002734_020 Hb_000422_090--Hb_002734_020 Hb_001856_250 Hb_001856_250 Hb_000422_090--Hb_001856_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0126646 0.53139 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.189671

CAGE analysis