Hb_001141_250

Information

Type -
Description -
Location Contig1141: 181731-184300
Sequence    

Annotation

kegg
ID cit:102628543
description uncharacterized LOC102628543
nr
ID KHN38789.1
description hypothetical protein glysoja_047929, partial [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2S381
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_047929 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04250: 183991-184227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_250 0.0 - - hypothetical protein glysoja_047929, partial [Glycine soja]
2 Hb_001214_040 0.1421877911 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
3 Hb_008762_010 0.1490671635 - - dopamine beta-monooxygenase, putative [Ricinus communis]
4 Hb_000094_170 0.1565057034 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
5 Hb_000130_350 0.1571650069 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
6 Hb_000417_220 0.1741370635 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Cucumis melo]
7 Hb_000428_040 0.1904687326 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
8 Hb_000236_230 0.1905398339 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
9 Hb_116701_010 0.1908121267 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
10 Hb_031284_060 0.1920464894 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
11 Hb_025645_020 0.1959229976 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_000176_080 0.1976058442 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
13 Hb_001001_070 0.1999831598 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
14 Hb_001789_100 0.2116602994 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000251_120 0.2134056051 - - O-acetyltransferase, putative [Ricinus communis]
16 Hb_008461_060 0.2136096708 - - hypothetical protein JCGZ_17379 [Jatropha curcas]
17 Hb_158092_050 0.2139843879 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
18 Hb_005183_130 0.2147989451 - - glycogenin, putative [Ricinus communis]
19 Hb_000061_290 0.2165151431 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002081_020 0.2187619087 transcription factor TF Family: LIM Cysteine and glycine-rich protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001141_250 Hb_001141_250 Hb_001214_040 Hb_001214_040 Hb_001141_250--Hb_001214_040 Hb_008762_010 Hb_008762_010 Hb_001141_250--Hb_008762_010 Hb_000094_170 Hb_000094_170 Hb_001141_250--Hb_000094_170 Hb_000130_350 Hb_000130_350 Hb_001141_250--Hb_000130_350 Hb_000417_220 Hb_000417_220 Hb_001141_250--Hb_000417_220 Hb_000428_040 Hb_000428_040 Hb_001141_250--Hb_000428_040 Hb_001214_040--Hb_008762_010 Hb_001214_040--Hb_000130_350 Hb_000236_230 Hb_000236_230 Hb_001214_040--Hb_000236_230 Hb_116701_010 Hb_116701_010 Hb_001214_040--Hb_116701_010 Hb_000165_020 Hb_000165_020 Hb_001214_040--Hb_000165_020 Hb_031284_060 Hb_031284_060 Hb_008762_010--Hb_031284_060 Hb_008762_010--Hb_000130_350 Hb_008762_010--Hb_116701_010 Hb_001189_080 Hb_001189_080 Hb_008762_010--Hb_001189_080 Hb_158092_050 Hb_158092_050 Hb_008762_010--Hb_158092_050 Hb_005523_030 Hb_005523_030 Hb_008762_010--Hb_005523_030 Hb_001001_070 Hb_001001_070 Hb_000094_170--Hb_001001_070 Hb_000094_170--Hb_008762_010 Hb_001789_100 Hb_001789_100 Hb_000094_170--Hb_001789_100 Hb_002081_020 Hb_002081_020 Hb_000094_170--Hb_002081_020 Hb_005914_120 Hb_005914_120 Hb_000094_170--Hb_005914_120 Hb_000130_350--Hb_116701_010 Hb_000130_350--Hb_158092_050 Hb_000130_350--Hb_031284_060 Hb_000173_240 Hb_000173_240 Hb_000130_350--Hb_000173_240 Hb_000130_350--Hb_000428_040 Hb_001832_170 Hb_001832_170 Hb_000417_220--Hb_001832_170 Hb_000061_290 Hb_000061_290 Hb_000417_220--Hb_000061_290 Hb_000417_220--Hb_000130_350 Hb_001959_100 Hb_001959_100 Hb_000417_220--Hb_001959_100 Hb_000251_120 Hb_000251_120 Hb_000417_220--Hb_000251_120 Hb_000417_220--Hb_001001_070 Hb_004657_070 Hb_004657_070 Hb_000428_040--Hb_004657_070 Hb_000428_040--Hb_116701_010 Hb_000428_040--Hb_000236_230 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0353089 0.173164 0.165177 3.30699 0.137261 0.278764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163107 0.128224 0 0 2.53417

CAGE analysis