Hb_000173_140

Information

Type -
Description -
Location Contig173: 104693-105142
Sequence    

Annotation

kegg
ID tcc:TCM_020511
description EF-hand calcium-binding domain-containing protein 4A
nr
ID XP_007034603.1
description EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ET99
description EF-hand calcium-binding domain-containing protein 4A OS=Theobroma cacao GN=TCM_020511 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_140 0.0 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
2 Hb_001500_090 0.0756341922 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001080_240 0.0798175389 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
4 Hb_005056_040 0.0850714822 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
5 Hb_000173_240 0.0855964939 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001477_050 0.0890859846 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
7 Hb_000193_320 0.0906754154 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000836_640 0.0936394254 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
9 Hb_002750_030 0.0966015687 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
10 Hb_009476_080 0.0985963158 - - BnaA03g18920D [Brassica napus]
11 Hb_000413_030 0.0994345668 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
12 Hb_002078_180 0.101338108 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
13 Hb_005686_040 0.1015442113 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005523_030 0.1026901859 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_000776_090 0.1037351734 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
16 Hb_000162_010 0.1071793775 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
17 Hb_002835_360 0.107617825 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
18 Hb_024074_030 0.108039337 - - hypothetical protein CISIN_1g043166mg [Citrus sinensis]
19 Hb_064047_020 0.1084227463 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
20 Hb_000037_150 0.1091850342 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]

Gene co-expression network

sample Hb_000173_140 Hb_000173_140 Hb_001500_090 Hb_001500_090 Hb_000173_140--Hb_001500_090 Hb_001080_240 Hb_001080_240 Hb_000173_140--Hb_001080_240 Hb_005056_040 Hb_005056_040 Hb_000173_140--Hb_005056_040 Hb_000173_240 Hb_000173_240 Hb_000173_140--Hb_000173_240 Hb_001477_050 Hb_001477_050 Hb_000173_140--Hb_001477_050 Hb_000193_320 Hb_000193_320 Hb_000173_140--Hb_000193_320 Hb_001500_090--Hb_000193_320 Hb_002750_030 Hb_002750_030 Hb_001500_090--Hb_002750_030 Hb_000776_090 Hb_000776_090 Hb_001500_090--Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_001500_090--Hb_000836_640 Hb_009476_080 Hb_009476_080 Hb_001500_090--Hb_009476_080 Hb_001500_090--Hb_001477_050 Hb_004920_150 Hb_004920_150 Hb_001080_240--Hb_004920_150 Hb_001080_240--Hb_001500_090 Hb_004117_230 Hb_004117_230 Hb_001080_240--Hb_004117_230 Hb_010488_050 Hb_010488_050 Hb_001080_240--Hb_010488_050 Hb_004713_040 Hb_004713_040 Hb_001080_240--Hb_004713_040 Hb_005056_040--Hb_001477_050 Hb_005056_040--Hb_002750_030 Hb_000037_150 Hb_000037_150 Hb_005056_040--Hb_000037_150 Hb_005056_040--Hb_000836_640 Hb_024074_030 Hb_024074_030 Hb_005056_040--Hb_024074_030 Hb_005056_040--Hb_001500_090 Hb_002078_180 Hb_002078_180 Hb_000173_240--Hb_002078_180 Hb_000173_240--Hb_000193_320 Hb_000173_240--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_000173_240--Hb_002835_360 Hb_001935_060 Hb_001935_060 Hb_000173_240--Hb_001935_060 Hb_005686_040 Hb_005686_040 Hb_000173_240--Hb_005686_040 Hb_001477_050--Hb_000836_640 Hb_001477_050--Hb_024074_030 Hb_001477_050--Hb_000037_150 Hb_001477_050--Hb_002750_030 Hb_000162_010 Hb_000162_010 Hb_001477_050--Hb_000162_010 Hb_000193_320--Hb_002078_180 Hb_000193_320--Hb_000776_090 Hb_000193_320--Hb_009476_080 Hb_000086_490 Hb_000086_490 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0681712 0.36647 0.997715 21.3342 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.160516 0.126082 0 0.477214 12.6319

CAGE analysis