Hb_001080_240

Information

Type -
Description -
Location Contig1080: 227186-227908
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G152800g
description hypothetical protein
nr
ID XP_007162445.1
description hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7CWD3
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G152800g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02437: 227285-227831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001080_240 0.0 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
2 Hb_004920_150 0.0786445009 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000173_140 0.0798175389 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
4 Hb_001500_090 0.088376622 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004117_230 0.0906104525 - - lipid transfer precursor protein [Hevea brasiliensis]
6 Hb_010488_050 0.0951412261 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
7 Hb_004713_040 0.0957055475 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
8 Hb_026317_040 0.0968320903 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
9 Hb_000193_320 0.0994787916 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001477_050 0.1001356856 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
11 Hb_001014_180 0.1009076748 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
12 Hb_158092_090 0.1024677701 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000162_010 0.1032585321 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
14 Hb_000776_090 0.1042241644 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
15 Hb_005056_040 0.1043559565 - - hypothetical protein POPTR_0007s14730g [Populus trichocarpa]
16 Hb_000836_640 0.1044213552 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
17 Hb_002739_140 0.1065403014 - - PREDICTED: protein TPX2 [Jatropha curcas]
18 Hb_000173_240 0.1068178772 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010166_010 0.1071785322 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
20 Hb_112765_010 0.1092741421 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_001080_240 Hb_001080_240 Hb_004920_150 Hb_004920_150 Hb_001080_240--Hb_004920_150 Hb_000173_140 Hb_000173_140 Hb_001080_240--Hb_000173_140 Hb_001500_090 Hb_001500_090 Hb_001080_240--Hb_001500_090 Hb_004117_230 Hb_004117_230 Hb_001080_240--Hb_004117_230 Hb_010488_050 Hb_010488_050 Hb_001080_240--Hb_010488_050 Hb_004713_040 Hb_004713_040 Hb_001080_240--Hb_004713_040 Hb_002739_140 Hb_002739_140 Hb_004920_150--Hb_002739_140 Hb_004920_150--Hb_004117_230 Hb_003972_070 Hb_003972_070 Hb_004920_150--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_004920_150--Hb_038927_020 Hb_004920_150--Hb_010488_050 Hb_000776_090 Hb_000776_090 Hb_004920_150--Hb_000776_090 Hb_000173_140--Hb_001500_090 Hb_005056_040 Hb_005056_040 Hb_000173_140--Hb_005056_040 Hb_000173_240 Hb_000173_240 Hb_000173_140--Hb_000173_240 Hb_001477_050 Hb_001477_050 Hb_000173_140--Hb_001477_050 Hb_000193_320 Hb_000193_320 Hb_000173_140--Hb_000193_320 Hb_001500_090--Hb_000193_320 Hb_002750_030 Hb_002750_030 Hb_001500_090--Hb_002750_030 Hb_001500_090--Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_001500_090--Hb_000836_640 Hb_009476_080 Hb_009476_080 Hb_001500_090--Hb_009476_080 Hb_001500_090--Hb_001477_050 Hb_034507_030 Hb_034507_030 Hb_004117_230--Hb_034507_030 Hb_001014_180 Hb_001014_180 Hb_004117_230--Hb_001014_180 Hb_006483_020 Hb_006483_020 Hb_004117_230--Hb_006483_020 Hb_007281_010 Hb_007281_010 Hb_004117_230--Hb_007281_010 Hb_000462_040 Hb_000462_040 Hb_004117_230--Hb_000462_040 Hb_010488_050--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_010488_050--Hb_050514_030 Hb_112765_010 Hb_112765_010 Hb_010488_050--Hb_112765_010 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_004713_040--Hb_112765_010 Hb_143373_010 Hb_143373_010 Hb_004713_040--Hb_143373_010 Hb_000137_120 Hb_000137_120 Hb_004713_040--Hb_000137_120 Hb_002311_420 Hb_002311_420 Hb_004713_040--Hb_002311_420 Hb_000107_020 Hb_000107_020 Hb_004713_040--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_004713_040--Hb_007674_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276032 0.954315 30.7402 0 0.0715885
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.107364 0.168743 0 0.693775 23.5152

CAGE analysis