Hb_143373_010

Information

Type -
Description -
Location Contig143373: 166-663
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_012476711.1
description PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
swissprot
ID Q9LP24
description Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1
trembl
ID A0A0D2S5P1
description Gossypium raimondii chromosome 4, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_004G248900 PE=4 SV=1
Gene Ontology
ID GO:0003824
description disease resistance family protein lrr family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143373_010 0.0 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
2 Hb_000107_020 0.0136688727 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
3 Hb_007674_020 0.0220646125 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
4 Hb_000272_080 0.0249716594 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
5 Hb_002105_060 0.0263785136 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
6 Hb_000137_120 0.0301362193 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
7 Hb_078038_010 0.0348262548 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
8 Hb_002311_420 0.0372919597 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
9 Hb_005162_050 0.0435821826 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
10 Hb_000917_040 0.052507035 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
11 Hb_000307_020 0.0595415617 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
12 Hb_000286_120 0.0599309244 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
13 Hb_000101_230 0.0608047155 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
14 Hb_010098_030 0.0623654398 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001335_020 0.0668736589 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
16 Hb_005375_080 0.0681445541 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
17 Hb_006351_100 0.069297482 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
18 Hb_025311_010 0.0706893377 - - -
19 Hb_020178_030 0.0728631206 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000500_250 0.0748072306 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]

Gene co-expression network

sample Hb_143373_010 Hb_143373_010 Hb_000107_020 Hb_000107_020 Hb_143373_010--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_143373_010--Hb_007674_020 Hb_000272_080 Hb_000272_080 Hb_143373_010--Hb_000272_080 Hb_002105_060 Hb_002105_060 Hb_143373_010--Hb_002105_060 Hb_000137_120 Hb_000137_120 Hb_143373_010--Hb_000137_120 Hb_078038_010 Hb_078038_010 Hb_143373_010--Hb_078038_010 Hb_000107_020--Hb_007674_020 Hb_000107_020--Hb_000272_080 Hb_000107_020--Hb_002105_060 Hb_000107_020--Hb_078038_010 Hb_005162_050 Hb_005162_050 Hb_000107_020--Hb_005162_050 Hb_007674_020--Hb_000272_080 Hb_007674_020--Hb_002105_060 Hb_007674_020--Hb_078038_010 Hb_007674_020--Hb_005162_050 Hb_000272_080--Hb_002105_060 Hb_000272_080--Hb_078038_010 Hb_000272_080--Hb_005162_050 Hb_002105_060--Hb_078038_010 Hb_002105_060--Hb_005162_050 Hb_000917_040 Hb_000917_040 Hb_002105_060--Hb_000917_040 Hb_002311_420 Hb_002311_420 Hb_000137_120--Hb_002311_420 Hb_000286_120 Hb_000286_120 Hb_000137_120--Hb_000286_120 Hb_000101_230 Hb_000101_230 Hb_000137_120--Hb_000101_230 Hb_005375_080 Hb_005375_080 Hb_000137_120--Hb_005375_080 Hb_025311_010 Hb_025311_010 Hb_000137_120--Hb_025311_010 Hb_078038_010--Hb_005162_050 Hb_078038_010--Hb_000917_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.226228 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.19824

CAGE analysis