Hb_005162_050

Information

Type -
Description -
Location Contig5162: 49743-50346
Sequence    

Annotation

kegg
ID pmum:103326340
description putative ribonuclease H protein At1g65750
nr
ID KJB61324.1
description hypothetical protein B456_009G352100 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2TX68
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G352100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46510: 50106-51542
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005162_050 0.0 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
2 Hb_078038_010 0.0087605364 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
3 Hb_000917_040 0.0089319379 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
4 Hb_000307_020 0.0159737522 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
5 Hb_002105_060 0.0172105281 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
6 Hb_000272_080 0.0186175477 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
7 Hb_010098_030 0.0188009792 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007674_020 0.0215247469 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
9 Hb_001335_020 0.0233150485 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
10 Hb_006351_100 0.0257422735 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_000107_020 0.0299194927 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
12 Hb_009423_020 0.0321913379 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_143373_010 0.0435821826 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
14 Hb_160190_010 0.0507429324 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_002457_010 0.0518751185 - - polyprotein [Oryza australiensis]
16 Hb_091378_010 0.0531492749 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_159229_030 0.0538066141 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
18 Hb_000137_120 0.0736846522 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
19 Hb_002311_420 0.0808282695 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
20 Hb_008493_010 0.0884899694 - - hypothetical protein JCGZ_10529 [Jatropha curcas]

Gene co-expression network

sample Hb_005162_050 Hb_005162_050 Hb_078038_010 Hb_078038_010 Hb_005162_050--Hb_078038_010 Hb_000917_040 Hb_000917_040 Hb_005162_050--Hb_000917_040 Hb_000307_020 Hb_000307_020 Hb_005162_050--Hb_000307_020 Hb_002105_060 Hb_002105_060 Hb_005162_050--Hb_002105_060 Hb_000272_080 Hb_000272_080 Hb_005162_050--Hb_000272_080 Hb_010098_030 Hb_010098_030 Hb_005162_050--Hb_010098_030 Hb_078038_010--Hb_002105_060 Hb_078038_010--Hb_000272_080 Hb_007674_020 Hb_007674_020 Hb_078038_010--Hb_007674_020 Hb_078038_010--Hb_000917_040 Hb_000107_020 Hb_000107_020 Hb_078038_010--Hb_000107_020 Hb_000917_040--Hb_000307_020 Hb_000917_040--Hb_010098_030 Hb_001335_020 Hb_001335_020 Hb_000917_040--Hb_001335_020 Hb_006351_100 Hb_006351_100 Hb_000917_040--Hb_006351_100 Hb_000307_020--Hb_010098_030 Hb_000307_020--Hb_001335_020 Hb_000307_020--Hb_006351_100 Hb_009423_020 Hb_009423_020 Hb_000307_020--Hb_009423_020 Hb_002105_060--Hb_000272_080 Hb_002105_060--Hb_007674_020 Hb_002105_060--Hb_000107_020 Hb_002105_060--Hb_000917_040 Hb_000272_080--Hb_007674_020 Hb_000272_080--Hb_000107_020 Hb_143373_010 Hb_143373_010 Hb_000272_080--Hb_143373_010 Hb_010098_030--Hb_001335_020 Hb_010098_030--Hb_006351_100 Hb_010098_030--Hb_009423_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.399496 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.4299

CAGE analysis