Hb_000307_020

Information

Type -
Description -
Location Contig307: 59787-61391
Sequence    

Annotation

kegg
ID vvi:100255757
description uncharacterized LOC100255757
nr
ID XP_010664895.1
description PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AJY5
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031841 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000307_020 0.0 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
2 Hb_010098_030 0.0028275237 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000917_040 0.0070421648 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
4 Hb_001335_020 0.0073422526 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
5 Hb_006351_100 0.0097699271 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_005162_050 0.0159737522 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
7 Hb_009423_020 0.0162205087 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_078038_010 0.0247330848 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
9 Hb_002105_060 0.0331811107 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
10 Hb_000272_080 0.0345877264 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
11 Hb_160190_010 0.0347791063 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
12 Hb_002457_010 0.0359118478 - - polyprotein [Oryza australiensis]
13 Hb_091378_010 0.0371866468 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
14 Hb_007674_020 0.0374940218 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
15 Hb_159229_030 0.037844325 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
16 Hb_000107_020 0.0458856343 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
17 Hb_143373_010 0.0595415617 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
18 Hb_008493_010 0.0725527747 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
19 Hb_001695_050 0.0796143169 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
20 Hb_043346_010 0.0825318324 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]

Gene co-expression network

sample Hb_000307_020 Hb_000307_020 Hb_010098_030 Hb_010098_030 Hb_000307_020--Hb_010098_030 Hb_000917_040 Hb_000917_040 Hb_000307_020--Hb_000917_040 Hb_001335_020 Hb_001335_020 Hb_000307_020--Hb_001335_020 Hb_006351_100 Hb_006351_100 Hb_000307_020--Hb_006351_100 Hb_005162_050 Hb_005162_050 Hb_000307_020--Hb_005162_050 Hb_009423_020 Hb_009423_020 Hb_000307_020--Hb_009423_020 Hb_010098_030--Hb_001335_020 Hb_010098_030--Hb_006351_100 Hb_010098_030--Hb_000917_040 Hb_010098_030--Hb_009423_020 Hb_010098_030--Hb_005162_050 Hb_000917_040--Hb_005162_050 Hb_000917_040--Hb_001335_020 Hb_000917_040--Hb_006351_100 Hb_078038_010 Hb_078038_010 Hb_000917_040--Hb_078038_010 Hb_001335_020--Hb_006351_100 Hb_001335_020--Hb_009423_020 Hb_001335_020--Hb_005162_050 Hb_006351_100--Hb_009423_020 Hb_160190_010 Hb_160190_010 Hb_006351_100--Hb_160190_010 Hb_005162_050--Hb_078038_010 Hb_002105_060 Hb_002105_060 Hb_005162_050--Hb_002105_060 Hb_000272_080 Hb_000272_080 Hb_005162_050--Hb_000272_080 Hb_009423_020--Hb_160190_010 Hb_002457_010 Hb_002457_010 Hb_009423_020--Hb_002457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.124907 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.144933

CAGE analysis