Hb_009423_020

Information

Type -
Description -
Location Contig9423: 77917-79650
Sequence    

Annotation

kegg
ID rcu:RCOM_0803940
description serine-threonine protein kinase, plant-type, putative (EC:1.3.1.74)
nr
ID XP_002516600.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9LHF1
description Leucine-rich repeat extensin-like protein 4 OS=Arabidopsis thaliana GN=LRX4 PE=2 SV=1
trembl
ID B9RS81
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0803940 PE=4 SV=1
Gene Ontology
ID GO:0005199
description leucine-rich repeat extensin-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009423_020 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_006351_100 0.0064509423 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_001335_020 0.0088786289 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
4 Hb_010098_030 0.0133932013 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000307_020 0.0162205087 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
6 Hb_160190_010 0.0185623226 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
7 Hb_002457_010 0.0196954218 - - polyprotein [Oryza australiensis]
8 Hb_091378_010 0.0209706416 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_159229_030 0.0216285443 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
10 Hb_000917_040 0.0232617403 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
11 Hb_005162_050 0.0321913379 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
12 Hb_078038_010 0.0409478478 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
13 Hb_002105_060 0.0493923372 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
14 Hb_000272_080 0.0507982866 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
15 Hb_007674_020 0.0537031354 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
16 Hb_008493_010 0.0563562195 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
17 Hb_000107_020 0.0620900424 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
18 Hb_001695_050 0.0634234848 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
19 Hb_043346_010 0.0663435482 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
20 Hb_002857_010 0.0685523482 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]

Gene co-expression network

sample Hb_009423_020 Hb_009423_020 Hb_006351_100 Hb_006351_100 Hb_009423_020--Hb_006351_100 Hb_001335_020 Hb_001335_020 Hb_009423_020--Hb_001335_020 Hb_010098_030 Hb_010098_030 Hb_009423_020--Hb_010098_030 Hb_000307_020 Hb_000307_020 Hb_009423_020--Hb_000307_020 Hb_160190_010 Hb_160190_010 Hb_009423_020--Hb_160190_010 Hb_002457_010 Hb_002457_010 Hb_009423_020--Hb_002457_010 Hb_006351_100--Hb_001335_020 Hb_006351_100--Hb_010098_030 Hb_006351_100--Hb_000307_020 Hb_000917_040 Hb_000917_040 Hb_006351_100--Hb_000917_040 Hb_006351_100--Hb_160190_010 Hb_001335_020--Hb_010098_030 Hb_001335_020--Hb_000307_020 Hb_001335_020--Hb_000917_040 Hb_005162_050 Hb_005162_050 Hb_001335_020--Hb_005162_050 Hb_010098_030--Hb_000307_020 Hb_010098_030--Hb_000917_040 Hb_010098_030--Hb_005162_050 Hb_000307_020--Hb_000917_040 Hb_000307_020--Hb_005162_050 Hb_160190_010--Hb_002457_010 Hb_091378_010 Hb_091378_010 Hb_160190_010--Hb_091378_010 Hb_159229_030 Hb_159229_030 Hb_160190_010--Hb_159229_030 Hb_160190_010--Hb_001335_020 Hb_002457_010--Hb_091378_010 Hb_002457_010--Hb_159229_030 Hb_002457_010--Hb_006351_100 Hb_002457_010--Hb_001335_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.034975 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0438191

CAGE analysis