Hb_160190_010

Information

Type -
Description -
Location Contig160190: 1657-2357
Sequence    

Annotation

kegg
ID rcu:RCOM_1278050
description Flavonol synthase/flavanone 3-hydroxylase, putative (EC:1.14.11.23)
nr
ID XP_002527641.1
description Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9SNS2
description Flavonol synthase/flavanone 3-hydroxylase, putative OS=Ricinus communis GN=RCOM_1278050 PE=3 SV=1
Gene Ontology
ID GO:0045431
description s-norcoclaurine synthase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_160190_010 0.0 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
2 Hb_002457_010 0.0011332487 - - polyprotein [Oryza australiensis]
3 Hb_091378_010 0.0024086575 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_159229_030 0.0030666664 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
5 Hb_009423_020 0.0185623226 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006351_100 0.0250121956 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
7 Hb_001335_020 0.0274393385 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
8 Hb_010098_030 0.0319526953 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000307_020 0.0347791063 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
10 Hb_008493_010 0.0378084253 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
11 Hb_000917_040 0.0418176555 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
12 Hb_001695_050 0.0448806447 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
13 Hb_043346_010 0.0478029669 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]
14 Hb_002857_010 0.0500135585 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
15 Hb_005162_050 0.0507429324 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
16 Hb_002527_020 0.051531037 - - PREDICTED: F-box protein At1g30790-like [Jatropha curcas]
17 Hb_078038_010 0.0594942132 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
18 Hb_000062_040 0.0655138625 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
19 Hb_003623_060 0.0664252812 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002105_060 0.0679327344 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]

Gene co-expression network

sample Hb_160190_010 Hb_160190_010 Hb_002457_010 Hb_002457_010 Hb_160190_010--Hb_002457_010 Hb_091378_010 Hb_091378_010 Hb_160190_010--Hb_091378_010 Hb_159229_030 Hb_159229_030 Hb_160190_010--Hb_159229_030 Hb_009423_020 Hb_009423_020 Hb_160190_010--Hb_009423_020 Hb_006351_100 Hb_006351_100 Hb_160190_010--Hb_006351_100 Hb_001335_020 Hb_001335_020 Hb_160190_010--Hb_001335_020 Hb_002457_010--Hb_091378_010 Hb_002457_010--Hb_159229_030 Hb_002457_010--Hb_009423_020 Hb_002457_010--Hb_006351_100 Hb_002457_010--Hb_001335_020 Hb_091378_010--Hb_159229_030 Hb_091378_010--Hb_009423_020 Hb_091378_010--Hb_006351_100 Hb_091378_010--Hb_001335_020 Hb_159229_030--Hb_009423_020 Hb_159229_030--Hb_006351_100 Hb_159229_030--Hb_001335_020 Hb_009423_020--Hb_006351_100 Hb_009423_020--Hb_001335_020 Hb_010098_030 Hb_010098_030 Hb_009423_020--Hb_010098_030 Hb_000307_020 Hb_000307_020 Hb_009423_020--Hb_000307_020 Hb_006351_100--Hb_001335_020 Hb_006351_100--Hb_010098_030 Hb_006351_100--Hb_000307_020 Hb_000917_040 Hb_000917_040 Hb_006351_100--Hb_000917_040 Hb_001335_020--Hb_010098_030 Hb_001335_020--Hb_000307_020 Hb_001335_020--Hb_000917_040 Hb_005162_050 Hb_005162_050 Hb_001335_020--Hb_005162_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.287276 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.393117

CAGE analysis