Hb_001335_020

Information

Type -
Description -
Location Contig1335: 26714-26986
Sequence    

Annotation

kegg
ID cic:CICLE_v10033628mg
description hypothetical protein
nr
ID XP_006436321.1
description hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4TII4
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10033628mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein CICLE_v10033628mg, partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001335_020 0.0 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
2 Hb_006351_100 0.0024277358 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_010098_030 0.0045147619 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000307_020 0.0073422526 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
5 Hb_009423_020 0.0088786289 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000917_040 0.0143841567 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
7 Hb_005162_050 0.0233150485 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
8 Hb_160190_010 0.0274393385 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
9 Hb_002457_010 0.0285722679 - - polyprotein [Oryza australiensis]
10 Hb_091378_010 0.0298472865 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_159229_030 0.0305050814 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
12 Hb_078038_010 0.0320733039 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
13 Hb_002105_060 0.040519922 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
14 Hb_000272_080 0.0419262681 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
15 Hb_007674_020 0.044831975 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
16 Hb_000107_020 0.0532216482 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
17 Hb_008493_010 0.0652230223 - - hypothetical protein JCGZ_10529 [Jatropha curcas]
18 Hb_143373_010 0.0668736589 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
19 Hb_001695_050 0.0722873136 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
20 Hb_043346_010 0.0752060476 - - PREDICTED: uncharacterized protein LOC105761922 [Gossypium raimondii]

Gene co-expression network

sample Hb_001335_020 Hb_001335_020 Hb_006351_100 Hb_006351_100 Hb_001335_020--Hb_006351_100 Hb_010098_030 Hb_010098_030 Hb_001335_020--Hb_010098_030 Hb_000307_020 Hb_000307_020 Hb_001335_020--Hb_000307_020 Hb_009423_020 Hb_009423_020 Hb_001335_020--Hb_009423_020 Hb_000917_040 Hb_000917_040 Hb_001335_020--Hb_000917_040 Hb_005162_050 Hb_005162_050 Hb_001335_020--Hb_005162_050 Hb_006351_100--Hb_009423_020 Hb_006351_100--Hb_010098_030 Hb_006351_100--Hb_000307_020 Hb_006351_100--Hb_000917_040 Hb_160190_010 Hb_160190_010 Hb_006351_100--Hb_160190_010 Hb_010098_030--Hb_000307_020 Hb_010098_030--Hb_000917_040 Hb_010098_030--Hb_009423_020 Hb_010098_030--Hb_005162_050 Hb_000307_020--Hb_000917_040 Hb_000307_020--Hb_005162_050 Hb_000307_020--Hb_009423_020 Hb_009423_020--Hb_160190_010 Hb_002457_010 Hb_002457_010 Hb_009423_020--Hb_002457_010 Hb_000917_040--Hb_005162_050 Hb_078038_010 Hb_078038_010 Hb_000917_040--Hb_078038_010 Hb_005162_050--Hb_078038_010 Hb_002105_060 Hb_002105_060 Hb_005162_050--Hb_002105_060 Hb_000272_080 Hb_000272_080 Hb_005162_050--Hb_000272_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.920647 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.10597

CAGE analysis