Hb_002105_060

Information

Type -
Description -
Location Contig2105: 61395-61829
Sequence    

Annotation

kegg
ID pop:POPTR_0022s00320g
description hypothetical protein
nr
ID XP_006389489.1
description hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
swissprot
ID Q6NMK1
description Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana GN=GXM1 PE=1 SV=1
trembl
ID U7E2G6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0022s00320g PE=4 SV=1
Gene Ontology
ID GO:0008168
description glucuronoxylan 4-o-methyltransferase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002105_060 0.0 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
2 Hb_000272_080 0.0014071759 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
3 Hb_007674_020 0.0043147729 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
4 Hb_078038_010 0.0084504334 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
5 Hb_000107_020 0.0127112332 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
6 Hb_005162_050 0.0172105281 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
7 Hb_000917_040 0.0261410707 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
8 Hb_143373_010 0.0263785136 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
9 Hb_000307_020 0.0331811107 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
10 Hb_010098_030 0.0360074576 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001335_020 0.040519922 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
12 Hb_006351_100 0.0429461824 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
13 Hb_009423_020 0.0493923372 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000137_120 0.0564990179 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
15 Hb_002311_420 0.0636485306 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
16 Hb_160190_010 0.0679327344 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_002457_010 0.0690641004 - - polyprotein [Oryza australiensis]
18 Hb_091378_010 0.0703373147 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_159229_030 0.0709941601 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
20 Hb_112765_010 0.0829035601 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002105_060 Hb_002105_060 Hb_000272_080 Hb_000272_080 Hb_002105_060--Hb_000272_080 Hb_007674_020 Hb_007674_020 Hb_002105_060--Hb_007674_020 Hb_078038_010 Hb_078038_010 Hb_002105_060--Hb_078038_010 Hb_000107_020 Hb_000107_020 Hb_002105_060--Hb_000107_020 Hb_005162_050 Hb_005162_050 Hb_002105_060--Hb_005162_050 Hb_000917_040 Hb_000917_040 Hb_002105_060--Hb_000917_040 Hb_000272_080--Hb_007674_020 Hb_000272_080--Hb_078038_010 Hb_000272_080--Hb_000107_020 Hb_000272_080--Hb_005162_050 Hb_143373_010 Hb_143373_010 Hb_000272_080--Hb_143373_010 Hb_007674_020--Hb_000107_020 Hb_007674_020--Hb_078038_010 Hb_007674_020--Hb_005162_050 Hb_007674_020--Hb_143373_010 Hb_078038_010--Hb_005162_050 Hb_078038_010--Hb_000917_040 Hb_078038_010--Hb_000107_020 Hb_000107_020--Hb_143373_010 Hb_000107_020--Hb_005162_050 Hb_005162_050--Hb_000917_040 Hb_000307_020 Hb_000307_020 Hb_005162_050--Hb_000307_020 Hb_010098_030 Hb_010098_030 Hb_005162_050--Hb_010098_030 Hb_000917_040--Hb_000307_020 Hb_000917_040--Hb_010098_030 Hb_001335_020 Hb_001335_020 Hb_000917_040--Hb_001335_020 Hb_006351_100 Hb_006351_100 Hb_000917_040--Hb_006351_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 4.13982 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 4.10796

CAGE analysis