Hb_078038_010

Information

Type -
Description -
Location Contig78038: 126-754
Sequence    

Annotation

kegg
ID cic:CICLE_v10012017mg
description hypothetical protein
nr
ID KDO61011.1
description hypothetical protein CISIN_1g038197mg [Citrus sinensis]
swissprot
ID Q8VYJ2
description AT-hook motif nuclear-localized protein 1 OS=Arabidopsis thaliana GN=AHL1 PE=1 SV=1
trembl
ID A0A067FCS0
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g038197mg PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_078038_010 0.0 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
2 Hb_002105_060 0.0084504334 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
3 Hb_005162_050 0.0087605364 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
4 Hb_000272_080 0.0098575687 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
5 Hb_007674_020 0.012765045 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
6 Hb_000917_040 0.0176919932 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
7 Hb_000107_020 0.0211608787 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
8 Hb_000307_020 0.0247330848 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
9 Hb_010098_030 0.0275599361 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001335_020 0.0320733039 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
11 Hb_006351_100 0.0345000999 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
12 Hb_143373_010 0.0348262548 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
13 Hb_009423_020 0.0409478478 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_160190_010 0.0594942132 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
15 Hb_002457_010 0.0606260104 - - polyprotein [Oryza australiensis]
16 Hb_091378_010 0.0618997194 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_159229_030 0.0625568239 - - hypothetical protein CISIN_1g0034891mg, partial [Citrus sinensis]
18 Hb_000137_120 0.064938668 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
19 Hb_002311_420 0.0720854656 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
20 Hb_112765_010 0.0858171987 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_078038_010 Hb_078038_010 Hb_002105_060 Hb_002105_060 Hb_078038_010--Hb_002105_060 Hb_005162_050 Hb_005162_050 Hb_078038_010--Hb_005162_050 Hb_000272_080 Hb_000272_080 Hb_078038_010--Hb_000272_080 Hb_007674_020 Hb_007674_020 Hb_078038_010--Hb_007674_020 Hb_000917_040 Hb_000917_040 Hb_078038_010--Hb_000917_040 Hb_000107_020 Hb_000107_020 Hb_078038_010--Hb_000107_020 Hb_002105_060--Hb_000272_080 Hb_002105_060--Hb_007674_020 Hb_002105_060--Hb_000107_020 Hb_002105_060--Hb_005162_050 Hb_002105_060--Hb_000917_040 Hb_005162_050--Hb_000917_040 Hb_000307_020 Hb_000307_020 Hb_005162_050--Hb_000307_020 Hb_005162_050--Hb_000272_080 Hb_010098_030 Hb_010098_030 Hb_005162_050--Hb_010098_030 Hb_000272_080--Hb_007674_020 Hb_000272_080--Hb_000107_020 Hb_143373_010 Hb_143373_010 Hb_000272_080--Hb_143373_010 Hb_007674_020--Hb_000107_020 Hb_007674_020--Hb_005162_050 Hb_007674_020--Hb_143373_010 Hb_000917_040--Hb_000307_020 Hb_000917_040--Hb_010098_030 Hb_001335_020 Hb_001335_020 Hb_000917_040--Hb_001335_020 Hb_006351_100 Hb_006351_100 Hb_000917_040--Hb_006351_100 Hb_000107_020--Hb_143373_010 Hb_000107_020--Hb_005162_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.45209 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.49942

CAGE analysis