Hb_000173_240

Information

Type -
Description -
Location Contig173: 192318-201572
Sequence    

Annotation

kegg
ID rcu:RCOM_0678130
description hypothetical protein
nr
ID XP_002516789.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LUG9
description Mediator of RNA polymerase II transcription subunit 33A OS=Arabidopsis thaliana GN=MED33A PE=1 SV=1
trembl
ID B9RSS0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0678130 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 33a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16438: 196820-197025 , PASA_asmbl_16441: 199934-201367
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000173_240 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002078_180 0.0543502286 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
3 Hb_000193_320 0.0657825618 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009476_080 0.0697391989 - - BnaA03g18920D [Brassica napus]
5 Hb_002835_360 0.0708932363 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
6 Hb_001935_060 0.0765821168 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
7 Hb_005686_040 0.0777108112 - - conserved hypothetical protein [Ricinus communis]
8 Hb_010166_010 0.0812644372 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
9 Hb_038927_020 0.0827887316 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
10 Hb_000416_020 0.0843299956 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000173_140 0.0855964939 - - EF-hand calcium-binding domain-containing protein 4A [Theobroma cacao]
12 Hb_003058_240 0.0859221014 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
13 Hb_031284_060 0.0864877812 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
14 Hb_015807_090 0.0871778651 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_001377_220 0.0874497698 - - dopamine beta-monooxygenase, putative [Ricinus communis]
16 Hb_000347_060 0.0875245651 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
17 Hb_001500_090 0.0889194815 - - conserved hypothetical protein [Ricinus communis]
18 Hb_158092_050 0.0894813452 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
19 Hb_000086_490 0.0909108157 - - cellulose synthase [Populus tomentosa]
20 Hb_005523_030 0.0909499925 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]

Gene co-expression network

sample Hb_000173_240 Hb_000173_240 Hb_002078_180 Hb_002078_180 Hb_000173_240--Hb_002078_180 Hb_000193_320 Hb_000193_320 Hb_000173_240--Hb_000193_320 Hb_009476_080 Hb_009476_080 Hb_000173_240--Hb_009476_080 Hb_002835_360 Hb_002835_360 Hb_000173_240--Hb_002835_360 Hb_001935_060 Hb_001935_060 Hb_000173_240--Hb_001935_060 Hb_005686_040 Hb_005686_040 Hb_000173_240--Hb_005686_040 Hb_002078_180--Hb_005686_040 Hb_002078_180--Hb_002835_360 Hb_015807_090 Hb_015807_090 Hb_002078_180--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_002078_180--Hb_000086_490 Hb_002078_180--Hb_009476_080 Hb_002078_180--Hb_001935_060 Hb_000193_320--Hb_002078_180 Hb_001500_090 Hb_001500_090 Hb_000193_320--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000193_320--Hb_000776_090 Hb_000193_320--Hb_009476_080 Hb_000193_320--Hb_000086_490 Hb_000193_320--Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_009476_080--Hb_002835_360 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_002835_360--Hb_005686_040 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060 Hb_001377_220 Hb_001377_220 Hb_001935_060--Hb_001377_220 Hb_010166_010 Hb_010166_010 Hb_001935_060--Hb_010166_010 Hb_002311_010 Hb_002311_010 Hb_001935_060--Hb_002311_010 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_005686_040--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0337146 0.385926 0.995105 11.6229 0.0377567 0.0106738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0540726 0.0354622 0.054595 0.196503 8.51459

CAGE analysis