Hb_010166_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig10166: 5074-6840
Sequence    

Annotation

kegg
ID rcu:RCOM_0467770
description zinc finger protein, putative
nr
ID XP_012078032.1
description PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
swissprot
ID Q9C9N3
description Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis thaliana GN=At1g66810 PE=2 SV=1
trembl
ID A0A067KL69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13051 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00773: 5232-5533
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010166_010 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
2 Hb_001935_060 0.0401407679 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
3 Hb_001377_220 0.0469992923 - - dopamine beta-monooxygenase, putative [Ricinus communis]
4 Hb_050514_030 0.0520067009 - - PREDICTED: protein trichome birefringence-like 34 [Jatropha curcas]
5 Hb_002311_010 0.0552753975 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
6 Hb_000416_020 0.0577217776 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005686_040 0.0627051824 - - conserved hypothetical protein [Ricinus communis]
8 Hb_038927_020 0.0628624694 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
9 Hb_000776_090 0.064556073 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
10 Hb_002739_140 0.0668676951 - - PREDICTED: protein TPX2 [Jatropha curcas]
11 Hb_002078_180 0.0673126105 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
12 Hb_000347_060 0.0704035875 - - PREDICTED: uncharacterized protein LOC105631356 [Jatropha curcas]
13 Hb_005523_030 0.0706791917 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
14 Hb_000086_490 0.071646829 - - cellulose synthase [Populus tomentosa]
15 Hb_002662_070 0.0716882904 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
16 Hb_001051_060 0.0752367202 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
17 Hb_003972_070 0.0792812728 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
18 Hb_000173_240 0.0812644372 - - conserved hypothetical protein [Ricinus communis]
19 Hb_010288_010 0.0814969522 - - Beta-glucosidase, putative [Ricinus communis]
20 Hb_004920_150 0.0817014469 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010166_010 Hb_010166_010 Hb_001935_060 Hb_001935_060 Hb_010166_010--Hb_001935_060 Hb_001377_220 Hb_001377_220 Hb_010166_010--Hb_001377_220 Hb_050514_030 Hb_050514_030 Hb_010166_010--Hb_050514_030 Hb_002311_010 Hb_002311_010 Hb_010166_010--Hb_002311_010 Hb_000416_020 Hb_000416_020 Hb_010166_010--Hb_000416_020 Hb_005686_040 Hb_005686_040 Hb_010166_010--Hb_005686_040 Hb_001935_060--Hb_001377_220 Hb_001935_060--Hb_002311_010 Hb_002078_180 Hb_002078_180 Hb_001935_060--Hb_002078_180 Hb_001935_060--Hb_005686_040 Hb_038927_020 Hb_038927_020 Hb_001935_060--Hb_038927_020 Hb_001377_220--Hb_002311_010 Hb_002662_070 Hb_002662_070 Hb_001377_220--Hb_002662_070 Hb_001377_220--Hb_005686_040 Hb_001377_220--Hb_002078_180 Hb_000776_090 Hb_000776_090 Hb_050514_030--Hb_000776_090 Hb_050514_030--Hb_001935_060 Hb_000836_640 Hb_000836_640 Hb_050514_030--Hb_000836_640 Hb_002739_140 Hb_002739_140 Hb_050514_030--Hb_002739_140 Hb_010288_010 Hb_010288_010 Hb_050514_030--Hb_010288_010 Hb_002311_010--Hb_038927_020 Hb_007281_010 Hb_007281_010 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_000416_020 Hb_000416_020--Hb_038927_020 Hb_000416_020--Hb_001935_060 Hb_158092_090 Hb_158092_090 Hb_000416_020--Hb_158092_090 Hb_000416_020--Hb_001377_220 Hb_001051_060 Hb_001051_060 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_002078_180 Hb_000086_490 Hb_000086_490 Hb_005686_040--Hb_000086_490 Hb_002835_360 Hb_002835_360 Hb_005686_040--Hb_002835_360 Hb_005523_030 Hb_005523_030 Hb_005686_040--Hb_005523_030 Hb_015807_090 Hb_015807_090 Hb_005686_040--Hb_015807_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.29254 0.76055 10.719 0.0280257 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0259209 0 0.0207068 8.11794

CAGE analysis