Hb_158092_090

Information

Type -
Description -
Location Contig158092: 63945-71922
Sequence    

Annotation

kegg
ID rcu:RCOM_1438390
description zinc finger protein, putative
nr
ID XP_002512671.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8VYZ0
description E3 ubiquitin-protein ligase ORTHRUS 2 OS=Arabidopsis thaliana GN=ORTH2 PE=1 SV=1
trembl
ID B9RG02
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1438390 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase orthrus 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_158092_090 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000416_020 0.0599950735 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002311_010 0.0789159108 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
4 Hb_001014_180 0.079155891 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
5 Hb_038927_020 0.0807971587 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
6 Hb_007281_010 0.0866813061 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_001712_030 0.0871439005 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
8 Hb_001935_060 0.0885806875 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
9 Hb_010166_010 0.0893078079 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
10 Hb_003058_240 0.090458699 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
11 Hb_000173_240 0.0910656395 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000402_060 0.0941859038 - - PREDICTED: uncharacterized protein LOC105644642 isoform X2 [Jatropha curcas]
13 Hb_026198_080 0.0973387897 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 [Populus euphratica]
14 Hb_004920_150 0.0975350748 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001377_220 0.0996745735 - - dopamine beta-monooxygenase, putative [Ricinus communis]
16 Hb_026317_040 0.1002709617 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
17 Hb_002078_180 0.1005371358 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
18 Hb_004117_230 0.1009861134 - - lipid transfer precursor protein [Hevea brasiliensis]
19 Hb_000462_040 0.1016694207 - - ATSMC2, putative [Ricinus communis]
20 Hb_001053_120 0.1020981062 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]

Gene co-expression network

sample Hb_158092_090 Hb_158092_090 Hb_000416_020 Hb_000416_020 Hb_158092_090--Hb_000416_020 Hb_002311_010 Hb_002311_010 Hb_158092_090--Hb_002311_010 Hb_001014_180 Hb_001014_180 Hb_158092_090--Hb_001014_180 Hb_038927_020 Hb_038927_020 Hb_158092_090--Hb_038927_020 Hb_007281_010 Hb_007281_010 Hb_158092_090--Hb_007281_010 Hb_001712_030 Hb_001712_030 Hb_158092_090--Hb_001712_030 Hb_000416_020--Hb_038927_020 Hb_000416_020--Hb_002311_010 Hb_001935_060 Hb_001935_060 Hb_000416_020--Hb_001935_060 Hb_010166_010 Hb_010166_010 Hb_000416_020--Hb_010166_010 Hb_001377_220 Hb_001377_220 Hb_000416_020--Hb_001377_220 Hb_002311_010--Hb_038927_020 Hb_002311_010--Hb_001935_060 Hb_002311_010--Hb_007281_010 Hb_002311_010--Hb_001377_220 Hb_002311_010--Hb_010166_010 Hb_001014_180--Hb_007281_010 Hb_034507_030 Hb_034507_030 Hb_001014_180--Hb_034507_030 Hb_003972_070 Hb_003972_070 Hb_001014_180--Hb_003972_070 Hb_004117_230 Hb_004117_230 Hb_001014_180--Hb_004117_230 Hb_000462_040 Hb_000462_040 Hb_001014_180--Hb_000462_040 Hb_001014_180--Hb_002311_010 Hb_038927_020--Hb_001935_060 Hb_038927_020--Hb_007281_010 Hb_038927_020--Hb_001377_220 Hb_002739_140 Hb_002739_140 Hb_038927_020--Hb_002739_140 Hb_007281_010--Hb_000462_040 Hb_007281_010--Hb_034507_030 Hb_007281_010--Hb_001712_030 Hb_001712_030--Hb_000462_040 Hb_001712_030--Hb_038927_020 Hb_001712_030--Hb_002311_010 Hb_000311_100 Hb_000311_100 Hb_001712_030--Hb_000311_100 Hb_000165_260 Hb_000165_260 Hb_001712_030--Hb_000165_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0532196 0.203037 2.00104 0 0.00781702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0147754 0 0.0410888 1.94467

CAGE analysis