Hb_000193_320

Information

Type -
Description -
Location Contig193: 263446-264450
Sequence    

Annotation

kegg
ID rcu:RCOM_1471050
description hypothetical protein
nr
ID XP_002514717.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RLU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1471050 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000193_320 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002078_180 0.0538928901 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
3 Hb_001500_090 0.0594258536 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000776_090 0.0608283742 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
5 Hb_009476_080 0.0616410448 - - BnaA03g18920D [Brassica napus]
6 Hb_000086_490 0.0621142818 - - cellulose synthase [Populus tomentosa]
7 Hb_015807_090 0.063525003 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
8 Hb_005523_030 0.0636424262 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
9 Hb_000173_240 0.0657825618 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005686_040 0.0708701617 - - conserved hypothetical protein [Ricinus communis]
11 Hb_031284_060 0.0728179018 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
12 Hb_001935_060 0.0728488995 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
13 Hb_000162_010 0.0778779298 - - PREDICTED: dirigent protein 23 [Jatropha curcas]
14 Hb_000836_640 0.0780561121 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
15 Hb_001051_060 0.078213554 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
16 Hb_000328_030 0.0792580755 - - PREDICTED: cellulose synthase A catalytic subunit 7 [UDP-forming] [Jatropha curcas]
17 Hb_002750_030 0.0794064967 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
18 Hb_004920_150 0.0798488175 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002739_140 0.0800420097 - - PREDICTED: protein TPX2 [Jatropha curcas]
20 Hb_042083_010 0.0800763319 - - PREDICTED: cellulose synthase A catalytic subunit 8 [UDP-forming] [Jatropha curcas]

Gene co-expression network

sample Hb_000193_320 Hb_000193_320 Hb_002078_180 Hb_002078_180 Hb_000193_320--Hb_002078_180 Hb_001500_090 Hb_001500_090 Hb_000193_320--Hb_001500_090 Hb_000776_090 Hb_000776_090 Hb_000193_320--Hb_000776_090 Hb_009476_080 Hb_009476_080 Hb_000193_320--Hb_009476_080 Hb_000086_490 Hb_000086_490 Hb_000193_320--Hb_000086_490 Hb_015807_090 Hb_015807_090 Hb_000193_320--Hb_015807_090 Hb_005686_040 Hb_005686_040 Hb_002078_180--Hb_005686_040 Hb_002835_360 Hb_002835_360 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_015807_090 Hb_002078_180--Hb_000086_490 Hb_002078_180--Hb_009476_080 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_002750_030 Hb_002750_030 Hb_001500_090--Hb_002750_030 Hb_001500_090--Hb_000776_090 Hb_000836_640 Hb_000836_640 Hb_001500_090--Hb_000836_640 Hb_001500_090--Hb_009476_080 Hb_001477_050 Hb_001477_050 Hb_001500_090--Hb_001477_050 Hb_000776_090--Hb_000836_640 Hb_005523_030 Hb_005523_030 Hb_000776_090--Hb_005523_030 Hb_000776_090--Hb_000086_490 Hb_002739_140 Hb_002739_140 Hb_000776_090--Hb_002739_140 Hb_050514_030 Hb_050514_030 Hb_000776_090--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_000776_090--Hb_000162_010 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_009476_080--Hb_002835_360 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_000086_490--Hb_005523_030 Hb_000086_490--Hb_015807_090 Hb_000086_490--Hb_005686_040 Hb_000086_490--Hb_001051_060 Hb_000328_030 Hb_000328_030 Hb_000086_490--Hb_000328_030 Hb_015807_090--Hb_005523_030 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120963 3.58797 3.53686 73.6431 0.169244 0.140651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0503625 0.0396101 0.0729318 1.43344 51.7173

CAGE analysis