Hb_004713_040

Information

Type -
Description -
Location Contig4713: 22399-22993
Sequence    

Annotation

kegg
ID vvi:100261496
description beta-Amyrin Synthase 2-like
nr
ID KDP25032.1
description hypothetical protein JCGZ_22567 [Jatropha curcas]
swissprot
ID A8C980
description Germanicol synthase OS=Rhizophora stylosa GN=M1 PE=1 SV=1
trembl
ID A0A067JMB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22567 PE=4 SV=1
Gene Ontology
ID GO:0016871
description beta-amyrin synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004713_040 0.0 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
2 Hb_112765_010 0.0792074413 - - conserved hypothetical protein [Ricinus communis]
3 Hb_143373_010 0.0864223148 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
4 Hb_000137_120 0.0868760696 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
5 Hb_002311_420 0.0884937094 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
6 Hb_000107_020 0.0895962081 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
7 Hb_007674_020 0.092490042 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
8 Hb_000272_080 0.0936453311 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
9 Hb_002105_060 0.0942312837 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
10 Hb_001080_240 0.0957055475 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
11 Hb_000286_120 0.0969482519 - - PREDICTED: uncharacterized protein LOC105633393 [Jatropha curcas]
12 Hb_000101_230 0.0973647841 - - hypothetical protein CICLE_v10030840mg [Citrus clementina]
13 Hb_078038_010 0.0980975306 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
14 Hb_010488_050 0.0986972698 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
15 Hb_005375_080 0.1010926892 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
16 Hb_025311_010 0.102475639 - - -
17 Hb_005162_050 0.102680049 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
18 Hb_020178_030 0.103691571 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004920_150 0.103852465 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000500_250 0.1048050831 - - hypothetical protein CISIN_1g006096mg [Citrus sinensis]

Gene co-expression network

sample Hb_004713_040 Hb_004713_040 Hb_112765_010 Hb_112765_010 Hb_004713_040--Hb_112765_010 Hb_143373_010 Hb_143373_010 Hb_004713_040--Hb_143373_010 Hb_000137_120 Hb_000137_120 Hb_004713_040--Hb_000137_120 Hb_002311_420 Hb_002311_420 Hb_004713_040--Hb_002311_420 Hb_000107_020 Hb_000107_020 Hb_004713_040--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_004713_040--Hb_007674_020 Hb_000111_060 Hb_000111_060 Hb_112765_010--Hb_000111_060 Hb_010488_050 Hb_010488_050 Hb_112765_010--Hb_010488_050 Hb_112765_010--Hb_143373_010 Hb_112765_010--Hb_000107_020 Hb_112765_010--Hb_007674_020 Hb_143373_010--Hb_000107_020 Hb_143373_010--Hb_007674_020 Hb_000272_080 Hb_000272_080 Hb_143373_010--Hb_000272_080 Hb_002105_060 Hb_002105_060 Hb_143373_010--Hb_002105_060 Hb_143373_010--Hb_000137_120 Hb_078038_010 Hb_078038_010 Hb_143373_010--Hb_078038_010 Hb_000137_120--Hb_002311_420 Hb_000286_120 Hb_000286_120 Hb_000137_120--Hb_000286_120 Hb_000101_230 Hb_000101_230 Hb_000137_120--Hb_000101_230 Hb_005375_080 Hb_005375_080 Hb_000137_120--Hb_005375_080 Hb_025311_010 Hb_025311_010 Hb_000137_120--Hb_025311_010 Hb_002311_420--Hb_000286_120 Hb_002311_420--Hb_000101_230 Hb_002311_420--Hb_005375_080 Hb_002311_420--Hb_025311_010 Hb_020178_030 Hb_020178_030 Hb_002311_420--Hb_020178_030 Hb_000107_020--Hb_007674_020 Hb_000107_020--Hb_000272_080 Hb_000107_020--Hb_002105_060 Hb_000107_020--Hb_078038_010 Hb_005162_050 Hb_005162_050 Hb_000107_020--Hb_005162_050 Hb_007674_020--Hb_000272_080 Hb_007674_020--Hb_002105_060 Hb_007674_020--Hb_078038_010 Hb_007674_020--Hb_005162_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.207473 29.9965 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.59548 24.6311

CAGE analysis