Hb_112765_010

Information

Type -
Description -
Location Contig112765: 122-1465
Sequence    

Annotation

kegg
ID rcu:RCOM_0186680
description hypothetical protein
nr
ID XP_002532108.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q8LED3
description Protein trichome birefringence-like 3 OS=Arabidopsis thaliana GN=TBL3 PE=2 SV=1
trembl
ID B9T1I9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0186680 PE=4 SV=1
Gene Ontology
ID GO:0005794
description protein trichome birefringence-like 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_112765_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000111_060 0.0417277007 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
3 Hb_010488_050 0.075487824 transcription factor TF Family: LIM hypothetical protein JCGZ_14428 [Jatropha curcas]
4 Hb_143373_010 0.0790628922 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 [Gossypium raimondii]
5 Hb_004713_040 0.0792074413 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
6 Hb_000107_020 0.0800039807 - - PREDICTED: uncharacterized protein LOC105032542 [Elaeis guineensis]
7 Hb_007674_020 0.0817109383 - - PREDICTED: serpin-ZX-like [Jatropha curcas]
8 Hb_000272_080 0.0824918833 - - temperature-induced lipocalin [Populus tremula x Populus tremuloides]
9 Hb_002105_060 0.0829035601 - - hypothetical protein POPTR_0022s00320g [Populus trichocarpa]
10 Hb_000137_120 0.0850455633 - - hypothetical protein JCGZ_15021 [Jatropha curcas]
11 Hb_078038_010 0.0858171987 - - hypothetical protein CISIN_1g038197mg [Citrus sinensis]
12 Hb_002311_420 0.0879263888 - - hypothetical protein JCGZ_18919 [Jatropha curcas]
13 Hb_003972_070 0.0891341922 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
14 Hb_135737_010 0.0894027672 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
15 Hb_005162_050 0.0895757965 - - hypothetical protein B456_009G352100 [Gossypium raimondii]
16 Hb_000917_040 0.0940882884 - - PREDICTED: uncharacterized protein LOC105639996 [Jatropha curcas]
17 Hb_002311_020 0.0958615251 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
18 Hb_004920_150 0.0980259214 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000307_020 0.0980685112 - - PREDICTED: uncharacterized protein LOC100255757 [Vitis vinifera]
20 Hb_010098_030 0.0997603573 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_112765_010 Hb_112765_010 Hb_000111_060 Hb_000111_060 Hb_112765_010--Hb_000111_060 Hb_010488_050 Hb_010488_050 Hb_112765_010--Hb_010488_050 Hb_143373_010 Hb_143373_010 Hb_112765_010--Hb_143373_010 Hb_004713_040 Hb_004713_040 Hb_112765_010--Hb_004713_040 Hb_000107_020 Hb_000107_020 Hb_112765_010--Hb_000107_020 Hb_007674_020 Hb_007674_020 Hb_112765_010--Hb_007674_020 Hb_135737_010 Hb_135737_010 Hb_000111_060--Hb_135737_010 Hb_003972_070 Hb_003972_070 Hb_000111_060--Hb_003972_070 Hb_000111_060--Hb_010488_050 Hb_026317_040 Hb_026317_040 Hb_000111_060--Hb_026317_040 Hb_064396_020 Hb_064396_020 Hb_000111_060--Hb_064396_020 Hb_002739_140 Hb_002739_140 Hb_010488_050--Hb_002739_140 Hb_004920_150 Hb_004920_150 Hb_010488_050--Hb_004920_150 Hb_050514_030 Hb_050514_030 Hb_010488_050--Hb_050514_030 Hb_000162_010 Hb_000162_010 Hb_010488_050--Hb_000162_010 Hb_010488_050--Hb_003972_070 Hb_143373_010--Hb_000107_020 Hb_143373_010--Hb_007674_020 Hb_000272_080 Hb_000272_080 Hb_143373_010--Hb_000272_080 Hb_002105_060 Hb_002105_060 Hb_143373_010--Hb_002105_060 Hb_000137_120 Hb_000137_120 Hb_143373_010--Hb_000137_120 Hb_078038_010 Hb_078038_010 Hb_143373_010--Hb_078038_010 Hb_004713_040--Hb_143373_010 Hb_004713_040--Hb_000137_120 Hb_002311_420 Hb_002311_420 Hb_004713_040--Hb_002311_420 Hb_004713_040--Hb_000107_020 Hb_004713_040--Hb_007674_020 Hb_000107_020--Hb_007674_020 Hb_000107_020--Hb_000272_080 Hb_000107_020--Hb_002105_060 Hb_000107_020--Hb_078038_010 Hb_005162_050 Hb_005162_050 Hb_000107_020--Hb_005162_050 Hb_007674_020--Hb_000272_080 Hb_007674_020--Hb_002105_060 Hb_007674_020--Hb_078038_010 Hb_007674_020--Hb_005162_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.936138 40.6987 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0287655 35.8872

CAGE analysis