Hb_026317_040

Information

Type -
Description -
Location Contig26317: 28769-29484
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12270g
description POPTRDRAFT_557216; hypothetical protein
nr
ID XP_002313779.1
description hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HRJ9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s12270g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_026317_040 0.0 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
2 Hb_135737_010 0.0856506317 - - hypothetical protein POPTR_0004s02760g [Populus trichocarpa]
3 Hb_000111_060 0.0884766632 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
4 Hb_000563_520 0.0889739359 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_001080_240 0.0968320903 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
6 Hb_064396_020 0.097490724 - - hypothetical protein POPTR_0019s09950g [Populus trichocarpa]
7 Hb_077027_010 0.0975312037 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
8 Hb_000416_020 0.0990823735 - - conserved hypothetical protein [Ricinus communis]
9 Hb_158092_090 0.1002709617 - - zinc finger protein, putative [Ricinus communis]
10 Hb_004920_150 0.1022430056 - - conserved hypothetical protein [Ricinus communis]
11 Hb_112765_010 0.1050609 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004713_040 0.1118580197 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
13 Hb_001500_090 0.1133117931 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010288_010 0.1135770681 - - Beta-glucosidase, putative [Ricinus communis]
15 Hb_000392_500 0.1158777614 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010166_010 0.117583653 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_003058_240 0.1182591855 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
18 Hb_038927_020 0.1190567303 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
19 Hb_001935_060 0.1198685893 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
20 Hb_064445_040 0.1209302989 - - hypothetical protein POPTR_0005s09430g [Populus trichocarpa]

Gene co-expression network

sample Hb_026317_040 Hb_026317_040 Hb_135737_010 Hb_135737_010 Hb_026317_040--Hb_135737_010 Hb_000111_060 Hb_000111_060 Hb_026317_040--Hb_000111_060 Hb_000563_520 Hb_000563_520 Hb_026317_040--Hb_000563_520 Hb_001080_240 Hb_001080_240 Hb_026317_040--Hb_001080_240 Hb_064396_020 Hb_064396_020 Hb_026317_040--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_026317_040--Hb_077027_010 Hb_135737_010--Hb_064396_020 Hb_135737_010--Hb_077027_010 Hb_135737_010--Hb_000111_060 Hb_000392_500 Hb_000392_500 Hb_135737_010--Hb_000392_500 Hb_010288_010 Hb_010288_010 Hb_135737_010--Hb_010288_010 Hb_064445_040 Hb_064445_040 Hb_135737_010--Hb_064445_040 Hb_112765_010 Hb_112765_010 Hb_000111_060--Hb_112765_010 Hb_003972_070 Hb_003972_070 Hb_000111_060--Hb_003972_070 Hb_010488_050 Hb_010488_050 Hb_000111_060--Hb_010488_050 Hb_000111_060--Hb_064396_020 Hb_001163_010 Hb_001163_010 Hb_000563_520--Hb_001163_010 Hb_000580_200 Hb_000580_200 Hb_000563_520--Hb_000580_200 Hb_001053_120 Hb_001053_120 Hb_000563_520--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_000563_520--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_000563_520--Hb_006351_090 Hb_004920_150 Hb_004920_150 Hb_001080_240--Hb_004920_150 Hb_000173_140 Hb_000173_140 Hb_001080_240--Hb_000173_140 Hb_001500_090 Hb_001500_090 Hb_001080_240--Hb_001500_090 Hb_004117_230 Hb_004117_230 Hb_001080_240--Hb_004117_230 Hb_001080_240--Hb_010488_050 Hb_004713_040 Hb_004713_040 Hb_001080_240--Hb_004713_040 Hb_064396_020--Hb_077027_010 Hb_094439_040 Hb_094439_040 Hb_064396_020--Hb_094439_040 Hb_000557_080 Hb_000557_080 Hb_064396_020--Hb_000557_080 Hb_001289_040 Hb_001289_040 Hb_064396_020--Hb_001289_040 Hb_064396_020--Hb_000392_500 Hb_077027_010--Hb_094439_040 Hb_077027_010--Hb_001289_040 Hb_077027_010--Hb_000557_080 Hb_077027_010--Hb_000392_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.381271 5.0155 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.128654 4.35283

CAGE analysis