Hb_000563_520

Information

Type -
Description -
Location Contig563: 379710-381290
Sequence    

Annotation

kegg
ID rcu:RCOM_0681960
description multidrug resistance pump, putative
nr
ID XP_002516950.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q9SIA4
description MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1
trembl
ID B9RT81
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0681960 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_520 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_026317_040 0.0889739359 - - hypothetical protein POPTR_0009s12270g [Populus trichocarpa]
3 Hb_001163_010 0.0890835327 - - PREDICTED: syncoilin [Jatropha curcas]
4 Hb_000580_200 0.0915191317 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
5 Hb_001053_120 0.092007063 transcription factor TF Family: MYB PREDICTED: transcription factor MYB46-like [Populus euphratica]
6 Hb_009158_040 0.0977736289 - - PREDICTED: auxin-induced protein 15A [Jatropha curcas]
7 Hb_006351_090 0.0988555346 - - UDP-glycosyltransferase 85A1 [Gossypium arboreum]
8 Hb_151290_010 0.0996384756 - - unnamed protein product [Vitis vinifera]
9 Hb_001097_030 0.108311482 - - nuclear transport factor, putative [Ricinus communis]
10 Hb_000416_020 0.1087152608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010883_160 0.1113699439 - - PREDICTED: pathogenesis-related protein 5 isoform X1 [Jatropha curcas]
12 Hb_001097_170 0.113030929 - - PREDICTED: protein NDR1 [Jatropha curcas]
13 Hb_000029_210 0.1142289199 - - protein binding protein, putative [Ricinus communis]
14 Hb_158092_090 0.1156479136 - - zinc finger protein, putative [Ricinus communis]
15 Hb_002170_030 0.1162028996 - - PREDICTED: laccase-4-like [Jatropha curcas]
16 Hb_077027_010 0.1163810649 - - hypothetical protein JCGZ_04511 [Jatropha curcas]
17 Hb_008705_080 0.1165282731 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
18 Hb_000427_020 0.1190680962 - - PsbA, partial [Dianthus pygmaeus]
19 Hb_135887_010 0.1191185569 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
20 Hb_094439_040 0.1192151699 - - PREDICTED: cytochrome P450 93A1-like [Citrus sinensis]

Gene co-expression network

sample Hb_000563_520 Hb_000563_520 Hb_026317_040 Hb_026317_040 Hb_000563_520--Hb_026317_040 Hb_001163_010 Hb_001163_010 Hb_000563_520--Hb_001163_010 Hb_000580_200 Hb_000580_200 Hb_000563_520--Hb_000580_200 Hb_001053_120 Hb_001053_120 Hb_000563_520--Hb_001053_120 Hb_009158_040 Hb_009158_040 Hb_000563_520--Hb_009158_040 Hb_006351_090 Hb_006351_090 Hb_000563_520--Hb_006351_090 Hb_135737_010 Hb_135737_010 Hb_026317_040--Hb_135737_010 Hb_000111_060 Hb_000111_060 Hb_026317_040--Hb_000111_060 Hb_001080_240 Hb_001080_240 Hb_026317_040--Hb_001080_240 Hb_064396_020 Hb_064396_020 Hb_026317_040--Hb_064396_020 Hb_077027_010 Hb_077027_010 Hb_026317_040--Hb_077027_010 Hb_001163_010--Hb_001053_120 Hb_000029_210 Hb_000029_210 Hb_001163_010--Hb_000029_210 Hb_001163_010--Hb_009158_040 Hb_008518_060 Hb_008518_060 Hb_001163_010--Hb_008518_060 Hb_000427_020 Hb_000427_020 Hb_001163_010--Hb_000427_020 Hb_002170_030 Hb_002170_030 Hb_001163_010--Hb_002170_030 Hb_135887_010 Hb_135887_010 Hb_000580_200--Hb_135887_010 Hb_151290_010 Hb_151290_010 Hb_000580_200--Hb_151290_010 Hb_003786_030 Hb_003786_030 Hb_000580_200--Hb_003786_030 Hb_000580_200--Hb_009158_040 Hb_023342_010 Hb_023342_010 Hb_000580_200--Hb_023342_010 Hb_000023_100 Hb_000023_100 Hb_000580_200--Hb_000023_100 Hb_001053_120--Hb_009158_040 Hb_001053_120--Hb_002170_030 Hb_001053_120--Hb_023342_010 Hb_001053_120--Hb_000029_210 Hb_026198_080 Hb_026198_080 Hb_001053_120--Hb_026198_080 Hb_009158_040--Hb_002170_030 Hb_009158_040--Hb_026198_080 Hb_009158_040--Hb_023342_010 Hb_009158_040--Hb_006351_090 Hb_006351_090--Hb_002170_030 Hb_003906_080 Hb_003906_080 Hb_006351_090--Hb_003906_080 Hb_008705_080 Hb_008705_080 Hb_006351_090--Hb_008705_080 Hb_006351_090--Hb_001053_120 Hb_006351_090--Hb_023342_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0414083 0 0.419377 3.31143 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0790068 3.93249

CAGE analysis