Hb_004657_070

Information

Type -
Description -
Location Contig4657: 62381-63325
Sequence    

Annotation

kegg
ID pop:POPTR_0005s18480g
description POPTRDRAFT_558891; hypothetical protein
nr
ID XP_012079292.1
description PREDICTED: protein IRX15-LIKE [Jatropha curcas]
swissprot
ID Q9FH92
description Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
trembl
ID A0A067K6V7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12442 PE=4 SV=1
Gene Ontology
ID GO:0000139
description duf579 partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44053: 62182-63490
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004657_070 0.0 - - PREDICTED: protein IRX15-LIKE [Jatropha curcas]
2 Hb_000428_040 0.0985253139 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
3 Hb_000482_080 0.1050129195 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
4 Hb_000193_130 0.1225118429 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000608_090 0.1229750593 - - conserved hypothetical protein [Ricinus communis]
6 Hb_031330_010 0.1243387492 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
7 Hb_004586_440 0.124818032 - - Blue copper protein precursor, putative [Ricinus communis]
8 Hb_017914_020 0.1248728885 - - -
9 Hb_064047_020 0.1286676538 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
10 Hb_003645_040 0.1287344245 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
11 Hb_002031_020 0.1296103661 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
12 Hb_003788_030 0.1296576273 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
13 Hb_002785_020 0.1320485338 - - PREDICTED: laccase-4-like [Jatropha curcas]
14 Hb_011912_010 0.1329178467 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
15 Hb_000362_030 0.1342155288 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
16 Hb_000684_190 0.1342770162 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
17 Hb_000422_090 0.1346753292 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002085_060 0.1349248262 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000413_030 0.1362381131 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
20 Hb_001307_180 0.1367226555 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004657_070 Hb_004657_070 Hb_000428_040 Hb_000428_040 Hb_004657_070--Hb_000428_040 Hb_000482_080 Hb_000482_080 Hb_004657_070--Hb_000482_080 Hb_000193_130 Hb_000193_130 Hb_004657_070--Hb_000193_130 Hb_000608_090 Hb_000608_090 Hb_004657_070--Hb_000608_090 Hb_031330_010 Hb_031330_010 Hb_004657_070--Hb_031330_010 Hb_004586_440 Hb_004586_440 Hb_004657_070--Hb_004586_440 Hb_116701_010 Hb_116701_010 Hb_000428_040--Hb_116701_010 Hb_000236_230 Hb_000236_230 Hb_000428_040--Hb_000236_230 Hb_000130_350 Hb_000130_350 Hb_000428_040--Hb_000130_350 Hb_008762_010 Hb_008762_010 Hb_000428_040--Hb_008762_010 Hb_000173_140 Hb_000173_140 Hb_000428_040--Hb_000173_140 Hb_000362_030 Hb_000362_030 Hb_000482_080--Hb_000362_030 Hb_000580_210 Hb_000580_210 Hb_000482_080--Hb_000580_210 Hb_000482_080--Hb_004586_440 Hb_005183_130 Hb_005183_130 Hb_000482_080--Hb_005183_130 Hb_000482_080--Hb_000608_090 Hb_009767_040 Hb_009767_040 Hb_000193_130--Hb_009767_040 Hb_000521_030 Hb_000521_030 Hb_000193_130--Hb_000521_030 Hb_057343_010 Hb_057343_010 Hb_000193_130--Hb_057343_010 Hb_002785_020 Hb_002785_020 Hb_000193_130--Hb_002785_020 Hb_000327_350 Hb_000327_350 Hb_000193_130--Hb_000327_350 Hb_003788_030 Hb_003788_030 Hb_000193_130--Hb_003788_030 Hb_005616_020 Hb_005616_020 Hb_000608_090--Hb_005616_020 Hb_000608_090--Hb_031330_010 Hb_000608_090--Hb_004586_440 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_003376_060 Hb_003376_060 Hb_000608_090--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_000608_090--Hb_001456_030 Hb_000645_230 Hb_000645_230 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_071079_040 Hb_071079_040 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_001369_480 Hb_001369_480 Hb_004586_440--Hb_001369_480 Hb_004586_440--Hb_000362_030 Hb_004586_440--Hb_071079_040 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.46074 15.2638 14.6237 617.03 2.63802 1.78084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6629 4.23573 3.92234 9.18389 190.528

CAGE analysis