Hb_000362_030

Information

Type -
Description -
Location Contig362: 47526-51774
Sequence    

Annotation

kegg
ID rcu:RCOM_1692890
description calmodulin binding protein, putative
nr
ID XP_012074225.1
description PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID A0A067KWS5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09839 PE=4 SV=1
Gene Ontology
ID GO:0044249
description protein iq-domain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37197: 47518-51587 , PASA_asmbl_37198: 47518-48364 , PASA_asmbl_37200: 49124-49242
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000362_030 0.0 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
2 Hb_004586_440 0.0844230875 - - Blue copper protein precursor, putative [Ricinus communis]
3 Hb_031330_010 0.0857057774 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
4 Hb_001369_480 0.0913223012 transcription factor TF Family: NAC hypothetical protein POPTR_0012s14660g [Populus trichocarpa]
5 Hb_000608_090 0.0923053195 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000645_230 0.0960075921 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
7 Hb_000482_080 0.0962146288 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
8 Hb_071079_040 0.0986511682 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
9 Hb_000645_080 0.1062134532 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
10 Hb_002785_020 0.106275677 - - PREDICTED: laccase-4-like [Jatropha curcas]
11 Hb_000483_340 0.1073661931 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017914_020 0.1082387078 - - -
13 Hb_055276_010 0.108414139 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
14 Hb_004884_040 0.1088585873 - - hypothetical protein POPTR_0016s12910g [Populus trichocarpa]
15 Hb_000684_190 0.1133623032 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
16 Hb_000497_030 0.1157491535 - - -
17 Hb_000318_500 0.1159499858 - - conserved hypothetical protein [Ricinus communis]
18 Hb_118934_010 0.115989969 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
19 Hb_000327_350 0.116731279 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
20 Hb_002734_020 0.1167413544 - - PREDICTED: uncharacterized protein LOC105631540 [Jatropha curcas]

Gene co-expression network

sample Hb_000362_030 Hb_000362_030 Hb_004586_440 Hb_004586_440 Hb_000362_030--Hb_004586_440 Hb_031330_010 Hb_031330_010 Hb_000362_030--Hb_031330_010 Hb_001369_480 Hb_001369_480 Hb_000362_030--Hb_001369_480 Hb_000608_090 Hb_000608_090 Hb_000362_030--Hb_000608_090 Hb_000645_230 Hb_000645_230 Hb_000362_030--Hb_000645_230 Hb_000482_080 Hb_000482_080 Hb_000362_030--Hb_000482_080 Hb_004586_440--Hb_000608_090 Hb_004586_440--Hb_001369_480 Hb_071079_040 Hb_071079_040 Hb_004586_440--Hb_071079_040 Hb_004586_440--Hb_031330_010 Hb_011224_070 Hb_011224_070 Hb_004586_440--Hb_011224_070 Hb_031330_010--Hb_000645_230 Hb_000483_340 Hb_000483_340 Hb_031330_010--Hb_000483_340 Hb_004884_040 Hb_004884_040 Hb_031330_010--Hb_004884_040 Hb_000684_190 Hb_000684_190 Hb_031330_010--Hb_000684_190 Hb_031330_010--Hb_071079_040 Hb_001856_250 Hb_001856_250 Hb_031330_010--Hb_001856_250 Hb_012114_090 Hb_012114_090 Hb_001369_480--Hb_012114_090 Hb_000336_120 Hb_000336_120 Hb_001369_480--Hb_000336_120 Hb_001269_180 Hb_001269_180 Hb_001369_480--Hb_001269_180 Hb_055276_010 Hb_055276_010 Hb_001369_480--Hb_055276_010 Hb_006717_060 Hb_006717_060 Hb_001369_480--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_001369_480--Hb_000699_220 Hb_005616_020 Hb_005616_020 Hb_000608_090--Hb_005616_020 Hb_000608_090--Hb_031330_010 Hb_001158_170 Hb_001158_170 Hb_000608_090--Hb_001158_170 Hb_003376_060 Hb_003376_060 Hb_000608_090--Hb_003376_060 Hb_001456_030 Hb_001456_030 Hb_000608_090--Hb_001456_030 Hb_000645_230--Hb_000684_190 Hb_002785_020 Hb_002785_020 Hb_000645_230--Hb_002785_020 Hb_000645_230--Hb_004884_040 Hb_002734_020 Hb_002734_020 Hb_000645_230--Hb_002734_020 Hb_000645_230--Hb_000483_340 Hb_000580_210 Hb_000580_210 Hb_000482_080--Hb_000580_210 Hb_004657_070 Hb_004657_070 Hb_000482_080--Hb_004657_070 Hb_000482_080--Hb_004586_440 Hb_005183_130 Hb_005183_130 Hb_000482_080--Hb_005183_130 Hb_000482_080--Hb_000608_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.88712 9.47824 17.6169 333.872 2.70645 0.823224
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.548664 0.215777 0.399233 0.996002 70.9547

CAGE analysis