Hb_057343_010

Information

Type -
Description -
Location Contig57343: 11519-18742
Sequence    

Annotation

kegg
ID rcu:RCOM_1436800
description hypothetical protein
nr
ID KDP23331.1
description hypothetical protein JCGZ_23164 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057343_010 0.0 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
2 Hb_000193_130 0.0782585304 - - nucleic acid binding protein, putative [Ricinus communis]
3 Hb_004449_100 0.1011853608 - - -
4 Hb_009767_040 0.1061898596 - - PREDICTED: uncharacterized protein LOC105127022 [Populus euphratica]
5 Hb_000521_030 0.1085288277 - - PREDICTED: uncharacterized protein LOC105650350 [Jatropha curcas]
6 Hb_000327_350 0.1117100852 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]
7 Hb_003528_090 0.1182201507 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
8 Hb_000244_290 0.1200393524 - - PREDICTED: UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 [Jatropha curcas]
9 Hb_000243_240 0.1239139659 - - cytochrome P450 family protein [Populus trichocarpa]
10 Hb_000816_090 0.1273648004 transcription factor TF Family: TRAF protein binding protein, putative [Ricinus communis]
11 Hb_003060_020 0.1282798721 - - serine carboxypeptidase, putative [Ricinus communis]
12 Hb_001401_130 0.1312696803 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
13 Hb_001141_260 0.131829334 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
14 Hb_002785_020 0.1323400979 - - PREDICTED: laccase-4-like [Jatropha curcas]
15 Hb_011344_110 0.1323702705 transcription factor TF Family: MYB PREDICTED: protein ODORANT1 [Jatropha curcas]
16 Hb_180518_010 0.1357548417 - - PREDICTED: receptor-like protein 2 [Jatropha curcas]
17 Hb_001174_040 0.1369004928 - - -
18 Hb_002031_020 0.1380138133 - - hypothetical protein JCGZ_19971 [Jatropha curcas]
19 Hb_003788_030 0.1381884785 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_001157_120 0.1401998494 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]

Gene co-expression network

sample Hb_057343_010 Hb_057343_010 Hb_000193_130 Hb_000193_130 Hb_057343_010--Hb_000193_130 Hb_004449_100 Hb_004449_100 Hb_057343_010--Hb_004449_100 Hb_009767_040 Hb_009767_040 Hb_057343_010--Hb_009767_040 Hb_000521_030 Hb_000521_030 Hb_057343_010--Hb_000521_030 Hb_000327_350 Hb_000327_350 Hb_057343_010--Hb_000327_350 Hb_003528_090 Hb_003528_090 Hb_057343_010--Hb_003528_090 Hb_000193_130--Hb_009767_040 Hb_000193_130--Hb_000521_030 Hb_002785_020 Hb_002785_020 Hb_000193_130--Hb_002785_020 Hb_000193_130--Hb_000327_350 Hb_003788_030 Hb_003788_030 Hb_000193_130--Hb_003788_030 Hb_004449_100--Hb_009767_040 Hb_004449_100--Hb_000193_130 Hb_001141_260 Hb_001141_260 Hb_004449_100--Hb_001141_260 Hb_004449_100--Hb_000521_030 Hb_025557_080 Hb_025557_080 Hb_004449_100--Hb_025557_080 Hb_009767_040--Hb_000521_030 Hb_009767_040--Hb_002785_020 Hb_009767_040--Hb_003788_030 Hb_009767_040--Hb_000327_350 Hb_000521_030--Hb_000327_350 Hb_002757_040 Hb_002757_040 Hb_000521_030--Hb_002757_040 Hb_000521_030--Hb_002785_020 Hb_000816_090 Hb_000816_090 Hb_000521_030--Hb_000816_090 Hb_000327_350--Hb_000816_090 Hb_003060_020 Hb_003060_020 Hb_000327_350--Hb_003060_020 Hb_000327_350--Hb_003528_090 Hb_000318_500 Hb_000318_500 Hb_000327_350--Hb_000318_500 Hb_000244_290 Hb_000244_290 Hb_000327_350--Hb_000244_290 Hb_003528_090--Hb_003060_020 Hb_001157_120 Hb_001157_120 Hb_003528_090--Hb_001157_120 Hb_003528_090--Hb_000816_090 Hb_001401_130 Hb_001401_130 Hb_003528_090--Hb_001401_130 Hb_005396_020 Hb_005396_020 Hb_003528_090--Hb_005396_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.228044 0.0562728 10.505 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0 0 0.113162 1.44987

CAGE analysis