Hb_001141_260

Information

Type -
Description -
Location Contig1141: 186413-186715
Sequence    

Annotation

kegg
ID tcc:TCM_020647
description hypothetical protein
nr
ID XP_007034788.1
description Uncharacterized protein TCM_020647 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ETW0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_020647 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_260 0.0 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
2 Hb_000617_070 0.101619027 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
3 Hb_000243_240 0.1053385327 - - cytochrome P450 family protein [Populus trichocarpa]
4 Hb_004449_100 0.1090613715 - - -
5 Hb_000959_200 0.1114167038 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
6 Hb_002186_190 0.1136166166 - - -
7 Hb_002215_020 0.1143101862 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
8 Hb_000816_170 0.1158442409 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 15 [Jatropha curcas]
9 Hb_000358_070 0.1162708013 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
10 Hb_001401_130 0.1174239859 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
11 Hb_003528_090 0.1176873851 - - Uncharacterized protein TCM_037169 [Theobroma cacao]
12 Hb_000012_340 0.1222522127 - - PREDICTED: inorganic pyrophosphatase 3-like [Jatropha curcas]
13 Hb_001157_120 0.1235653552 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
14 Hb_001174_040 0.1260459754 - - -
15 Hb_000429_070 0.1275344769 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
16 Hb_014881_020 0.1285450457 - - Protein P21, putative [Ricinus communis]
17 Hb_003607_040 0.1287171844 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
18 Hb_001386_070 0.1299986927 - - PREDICTED: glucuronoxylan 4-O-methyltransferase 1-like [Jatropha curcas]
19 Hb_057343_010 0.131829334 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
20 Hb_029508_050 0.1327356451 - - PREDICTED: mechanosensitive ion channel protein 10-like isoform X2 [Musa acuminata subsp. malaccensis]

Gene co-expression network

sample Hb_001141_260 Hb_001141_260 Hb_000617_070 Hb_000617_070 Hb_001141_260--Hb_000617_070 Hb_000243_240 Hb_000243_240 Hb_001141_260--Hb_000243_240 Hb_004449_100 Hb_004449_100 Hb_001141_260--Hb_004449_100 Hb_000959_200 Hb_000959_200 Hb_001141_260--Hb_000959_200 Hb_002186_190 Hb_002186_190 Hb_001141_260--Hb_002186_190 Hb_002215_020 Hb_002215_020 Hb_001141_260--Hb_002215_020 Hb_001174_040 Hb_001174_040 Hb_000617_070--Hb_001174_040 Hb_009470_010 Hb_009470_010 Hb_000617_070--Hb_009470_010 Hb_027472_250 Hb_027472_250 Hb_000617_070--Hb_027472_250 Hb_009620_080 Hb_009620_080 Hb_000617_070--Hb_009620_080 Hb_001956_170 Hb_001956_170 Hb_000617_070--Hb_001956_170 Hb_001157_120 Hb_001157_120 Hb_000243_240--Hb_001157_120 Hb_000816_170 Hb_000816_170 Hb_000243_240--Hb_000816_170 Hb_000244_290 Hb_000244_290 Hb_000243_240--Hb_000244_290 Hb_001141_430 Hb_001141_430 Hb_000243_240--Hb_001141_430 Hb_001343_060 Hb_001343_060 Hb_000243_240--Hb_001343_060 Hb_011344_110 Hb_011344_110 Hb_000243_240--Hb_011344_110 Hb_009767_040 Hb_009767_040 Hb_004449_100--Hb_009767_040 Hb_057343_010 Hb_057343_010 Hb_004449_100--Hb_057343_010 Hb_000193_130 Hb_000193_130 Hb_004449_100--Hb_000193_130 Hb_000521_030 Hb_000521_030 Hb_004449_100--Hb_000521_030 Hb_025557_080 Hb_025557_080 Hb_004449_100--Hb_025557_080 Hb_140024_010 Hb_140024_010 Hb_000959_200--Hb_140024_010 Hb_016120_030 Hb_016120_030 Hb_000959_200--Hb_016120_030 Hb_004031_060 Hb_004031_060 Hb_000959_200--Hb_004031_060 Hb_005245_030 Hb_005245_030 Hb_000959_200--Hb_005245_030 Hb_019053_050 Hb_019053_050 Hb_000959_200--Hb_019053_050 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000637_090 Hb_000637_090 Hb_002186_190--Hb_000637_090 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340 Hb_007677_010 Hb_007677_010 Hb_002186_190--Hb_007677_010 Hb_002186_190--Hb_009470_010 Hb_003607_040 Hb_003607_040 Hb_002215_020--Hb_003607_040 Hb_002215_020--Hb_000012_340 Hb_103942_020 Hb_103942_020 Hb_002215_020--Hb_103942_020 Hb_002215_020--Hb_002186_190 Hb_001454_030 Hb_001454_030 Hb_002215_020--Hb_001454_030 Hb_002215_020--Hb_000816_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.14311 0 6.66726 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.13325 0.446463

CAGE analysis