Hb_000959_200

Information

Type -
Description -
Location Contig959: 179987-180379
Sequence    

Annotation

kegg
ID pop:POPTR_0007s07020g
description hypothetical protein
nr
ID XP_012075279.1
description PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000959_200 0.0 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
2 Hb_001141_260 0.1114167038 - - Uncharacterized protein TCM_020647 [Theobroma cacao]
3 Hb_140024_010 0.1158308645 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
4 Hb_016120_030 0.1208675699 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
5 Hb_004031_060 0.1301071341 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
6 Hb_005245_030 0.1307804522 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
7 Hb_019053_050 0.1435822098 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_000243_240 0.15094076 - - cytochrome P450 family protein [Populus trichocarpa]
9 Hb_002215_020 0.1535465024 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
10 Hb_002999_010 0.1569355881 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
11 Hb_001210_120 0.1573634902 - - hypothetical protein JCGZ_06226 [Jatropha curcas]
12 Hb_025557_080 0.1597684103 transcription factor TF Family: zf-HD -
13 Hb_000617_070 0.1633654706 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
14 Hb_025161_060 0.1668224558 - - hypothetical protein JCGZ_23770 [Jatropha curcas]
15 Hb_001157_120 0.1698608238 - - PREDICTED: dirigent protein 19-like [Jatropha curcas]
16 Hb_002073_160 0.1700501092 - - hypothetical protein JCGZ_21740 [Jatropha curcas]
17 Hb_007237_060 0.171094629 - - -
18 Hb_004449_100 0.1773747958 - - -
19 Hb_000358_070 0.1783004213 - - hypothetical protein POPTR_0003s01410g [Populus trichocarpa]
20 Hb_003528_090 0.1795128885 - - Uncharacterized protein TCM_037169 [Theobroma cacao]

Gene co-expression network

sample Hb_000959_200 Hb_000959_200 Hb_001141_260 Hb_001141_260 Hb_000959_200--Hb_001141_260 Hb_140024_010 Hb_140024_010 Hb_000959_200--Hb_140024_010 Hb_016120_030 Hb_016120_030 Hb_000959_200--Hb_016120_030 Hb_004031_060 Hb_004031_060 Hb_000959_200--Hb_004031_060 Hb_005245_030 Hb_005245_030 Hb_000959_200--Hb_005245_030 Hb_019053_050 Hb_019053_050 Hb_000959_200--Hb_019053_050 Hb_000617_070 Hb_000617_070 Hb_001141_260--Hb_000617_070 Hb_000243_240 Hb_000243_240 Hb_001141_260--Hb_000243_240 Hb_004449_100 Hb_004449_100 Hb_001141_260--Hb_004449_100 Hb_002186_190 Hb_002186_190 Hb_001141_260--Hb_002186_190 Hb_002215_020 Hb_002215_020 Hb_001141_260--Hb_002215_020 Hb_140024_010--Hb_016120_030 Hb_002999_010 Hb_002999_010 Hb_140024_010--Hb_002999_010 Hb_140024_010--Hb_004031_060 Hb_000237_010 Hb_000237_010 Hb_140024_010--Hb_000237_010 Hb_000959_150 Hb_000959_150 Hb_140024_010--Hb_000959_150 Hb_016120_030--Hb_004031_060 Hb_016120_030--Hb_002999_010 Hb_016120_030--Hb_019053_050 Hb_016120_030--Hb_005245_030 Hb_004926_010 Hb_004926_010 Hb_016120_030--Hb_004926_010 Hb_004031_060--Hb_004926_010 Hb_004031_060--Hb_002999_010 Hb_004031_060--Hb_019053_050 Hb_000480_050 Hb_000480_050 Hb_004031_060--Hb_000480_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040 Hb_005373_030 Hb_005373_030 Hb_005245_030--Hb_005373_030 Hb_005245_030--Hb_002999_010 Hb_005245_030--Hb_004031_060 Hb_022597_010 Hb_022597_010 Hb_005245_030--Hb_022597_010 Hb_004617_010 Hb_004617_010 Hb_005245_030--Hb_004617_010 Hb_001335_040 Hb_001335_040 Hb_019053_050--Hb_001335_040 Hb_019053_050--Hb_001091_040 Hb_000086_530 Hb_000086_530 Hb_019053_050--Hb_000086_530 Hb_003371_030 Hb_003371_030 Hb_019053_050--Hb_003371_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.35213 0 57.0333 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.61606 3.31791

CAGE analysis