Hb_000237_010

Information

Type transcription factor
Description TF Family: SRS
Location Contig237: 11137-12071
Sequence    

Annotation

kegg
ID rcu:RCOM_1449160
description hypothetical protein
nr
ID XP_002512967.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SD40
description Protein SHI RELATED SEQUENCE 1 OS=Arabidopsis thaliana GN=SRS1 PE=1 SV=2
trembl
ID B9RHA8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1449160 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000237_010 0.0 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
2 Hb_010050_010 0.1019932567 - - -
3 Hb_007477_020 0.1241550464 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
4 Hb_003494_100 0.1315786017 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
5 Hb_140024_010 0.1362263835 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
6 Hb_002368_120 0.1383844271 - - hypothetical protein VITISV_033181 [Vitis vinifera]
7 Hb_106677_010 0.1506905203 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
8 Hb_002853_010 0.1541519344 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000479_100 0.1555297757 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
10 Hb_003058_090 0.1569266312 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
11 Hb_002999_010 0.1592677571 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
12 Hb_000480_050 0.1606766329 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
13 Hb_020712_020 0.1641472153 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
14 Hb_000355_020 0.1641909048 - - -
15 Hb_001278_010 0.1642837836 - - conserved hypothetical protein [Ricinus communis]
16 Hb_025526_110 0.1645783493 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
17 Hb_041188_010 0.1648608262 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
18 Hb_154146_010 0.1664554912 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
19 Hb_001304_150 0.1669474599 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
20 Hb_000320_250 0.1693036854 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]

Gene co-expression network

sample Hb_000237_010 Hb_000237_010 Hb_010050_010 Hb_010050_010 Hb_000237_010--Hb_010050_010 Hb_007477_020 Hb_007477_020 Hb_000237_010--Hb_007477_020 Hb_003494_100 Hb_003494_100 Hb_000237_010--Hb_003494_100 Hb_140024_010 Hb_140024_010 Hb_000237_010--Hb_140024_010 Hb_002368_120 Hb_002368_120 Hb_000237_010--Hb_002368_120 Hb_106677_010 Hb_106677_010 Hb_000237_010--Hb_106677_010 Hb_000959_150 Hb_000959_150 Hb_010050_010--Hb_000959_150 Hb_000563_620 Hb_000563_620 Hb_010050_010--Hb_000563_620 Hb_010050_010--Hb_140024_010 Hb_002999_010 Hb_002999_010 Hb_010050_010--Hb_002999_010 Hb_010050_010--Hb_007477_020 Hb_003058_090 Hb_003058_090 Hb_007477_020--Hb_003058_090 Hb_000480_050 Hb_000480_050 Hb_007477_020--Hb_000480_050 Hb_033153_030 Hb_033153_030 Hb_007477_020--Hb_033153_030 Hb_007477_020--Hb_002999_010 Hb_002874_100 Hb_002874_100 Hb_007477_020--Hb_002874_100 Hb_005373_030 Hb_005373_030 Hb_007477_020--Hb_005373_030 Hb_003494_100--Hb_002368_120 Hb_154146_010 Hb_154146_010 Hb_003494_100--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_003494_100--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_003494_100--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_003494_100--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_003494_100--Hb_000331_600 Hb_016120_030 Hb_016120_030 Hb_140024_010--Hb_016120_030 Hb_000959_200 Hb_000959_200 Hb_140024_010--Hb_000959_200 Hb_140024_010--Hb_002999_010 Hb_004031_060 Hb_004031_060 Hb_140024_010--Hb_004031_060 Hb_140024_010--Hb_000959_150 Hb_002368_120--Hb_154146_010 Hb_002368_120--Hb_001304_150 Hb_002368_120--Hb_000313_240 Hb_002368_120--Hb_012090_010 Hb_002368_120--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_002368_120--Hb_002092_050 Hb_000479_100 Hb_000479_100 Hb_106677_010--Hb_000479_100 Hb_002853_010 Hb_002853_010 Hb_106677_010--Hb_002853_010 Hb_001688_040 Hb_001688_040 Hb_106677_010--Hb_001688_040 Hb_000056_140 Hb_000056_140 Hb_106677_010--Hb_000056_140 Hb_005276_180 Hb_005276_180 Hb_106677_010--Hb_005276_180 Hb_001946_420 Hb_001946_420 Hb_106677_010--Hb_001946_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.104389 0 2.71384 0 0.0589345
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.214548 0

CAGE analysis