Hb_002368_120

Information

Type -
Description -
Location Contig2368: 154636-155792
Sequence    

Annotation

kegg
ID gmx:100305696
description uncharacterized LOC100305696
nr
ID CAN69634.1
description hypothetical protein VITISV_033181 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5B3I7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033181 PE=4 SV=1
Gene Ontology
ID GO:0016597
description transcription factor scream2-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002368_120 0.0 - - hypothetical protein VITISV_033181 [Vitis vinifera]
2 Hb_154146_010 0.0696485317 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
3 Hb_001304_150 0.0696923334 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_000313_240 0.071135019 - - hypothetical protein RCOM_0377590 [Ricinus communis]
5 Hb_012090_010 0.071244495 - - hypothetical protein RCOM_0904330 [Ricinus communis]
6 Hb_000331_600 0.0718907184 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
7 Hb_002092_050 0.0726058146 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
8 Hb_001278_010 0.0726849661 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000355_020 0.0733970299 - - -
10 Hb_065272_010 0.0739176801 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
11 Hb_000029_240 0.0757924725 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
12 Hb_020712_020 0.0768005449 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
13 Hb_025161_040 0.0786280296 - - kinase, putative [Ricinus communis]
14 Hb_003494_100 0.0800298583 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
15 Hb_025526_110 0.0808991914 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
16 Hb_041188_010 0.0826359381 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
17 Hb_002391_060 0.0845283684 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
18 Hb_051677_010 0.0849803892 - - Uncharacterized protein TCM_017953 [Theobroma cacao]
19 Hb_007455_010 0.0871125597 - - PREDICTED: uncharacterized protein LOC105800996 [Gossypium raimondii]
20 Hb_002792_040 0.0967856662 - - -

Gene co-expression network

sample Hb_002368_120 Hb_002368_120 Hb_154146_010 Hb_154146_010 Hb_002368_120--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_002368_120--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_002368_120--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_002368_120--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_002368_120--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_002368_120--Hb_002092_050 Hb_154146_010--Hb_001304_150 Hb_154146_010--Hb_000313_240 Hb_154146_010--Hb_012090_010 Hb_154146_010--Hb_000331_600 Hb_001278_010 Hb_001278_010 Hb_154146_010--Hb_001278_010 Hb_154146_010--Hb_002092_050 Hb_001304_150--Hb_000313_240 Hb_001304_150--Hb_012090_010 Hb_001304_150--Hb_000331_600 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010 Hb_000313_240--Hb_012090_010 Hb_000313_240--Hb_000331_600 Hb_000313_240--Hb_002092_050 Hb_000313_240--Hb_065272_010 Hb_012090_010--Hb_000331_600 Hb_012090_010--Hb_002092_050 Hb_012090_010--Hb_065272_010 Hb_000029_240 Hb_000029_240 Hb_012090_010--Hb_000029_240 Hb_000331_600--Hb_002092_050 Hb_000331_600--Hb_065272_010 Hb_000331_600--Hb_000029_240 Hb_002092_050--Hb_065272_010 Hb_002092_050--Hb_000029_240 Hb_025161_040 Hb_025161_040 Hb_002092_050--Hb_025161_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 6.29613 0 0.0676758
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.636374 0

CAGE analysis