Hb_005276_180

Information

Type -
Description -
Location Contig5276: 200195-200883
Sequence    

Annotation

kegg
ID pop:POPTR_0005s23040g
description POPTRDRAFT_559544; hypothetical protein
nr
ID XP_002307577.1
description hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9H876
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s23040g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47099: 200359-201050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_180 0.0 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
2 Hb_001688_040 0.0259816576 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000056_140 0.0293438276 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
4 Hb_001946_420 0.0454423481 - - protein with unknown function [Ricinus communis]
5 Hb_092416_020 0.0489609189 - - protein with unknown function [Ricinus communis]
6 Hb_031546_010 0.0600943494 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
7 Hb_005699_100 0.0731350431 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
8 Hb_000002_190 0.0895913871 transcription factor TF Family: ERF Ethylene-responsive transcription factor [Morus notabilis]
9 Hb_000003_520 0.0895913871 - - PREDICTED: cell division cycle protein 27 homolog B [Jatropha curcas]
10 Hb_000005_170 0.0895913871 transcription factor TF Family: bHLH PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR [Jatropha curcas]
11 Hb_000009_230 0.0895913871 - - hypothetical protein POPTR_0007s12290g [Populus trichocarpa]
12 Hb_000011_110 0.0895913871 - - PREDICTED: uncharacterized protein LOC105631299 [Jatropha curcas]
13 Hb_000012_390 0.0895913871 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000018_070 0.0895913871 - - PREDICTED: amino acid permease 8-like [Jatropha curcas]
15 Hb_000020_130 0.0895913871 - - conidial pigment biosynthesis oxidase Arb2/brown2 [Aspergillus clavatus NRRL 1]
16 Hb_000024_090 0.0895913871 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000025_560 0.0895913871 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
18 Hb_000028_310 0.0895913871 - - PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
19 Hb_000037_140 0.0895913871 - - PREDICTED: uncharacterized protein LOC104586896 [Nelumbo nucifera]
20 Hb_000046_420 0.0895913871 - - hypothetical protein JCGZ_02014 [Jatropha curcas]

Gene co-expression network

sample Hb_005276_180 Hb_005276_180 Hb_001688_040 Hb_001688_040 Hb_005276_180--Hb_001688_040 Hb_000056_140 Hb_000056_140 Hb_005276_180--Hb_000056_140 Hb_001946_420 Hb_001946_420 Hb_005276_180--Hb_001946_420 Hb_092416_020 Hb_092416_020 Hb_005276_180--Hb_092416_020 Hb_031546_010 Hb_031546_010 Hb_005276_180--Hb_031546_010 Hb_005699_100 Hb_005699_100 Hb_005276_180--Hb_005699_100 Hb_001688_040--Hb_000056_140 Hb_001688_040--Hb_001946_420 Hb_001688_040--Hb_092416_020 Hb_001688_040--Hb_031546_010 Hb_093084_040 Hb_093084_040 Hb_001688_040--Hb_093084_040 Hb_000056_140--Hb_001946_420 Hb_000056_140--Hb_092416_020 Hb_000056_140--Hb_031546_010 Hb_000056_140--Hb_093084_040 Hb_001946_420--Hb_092416_020 Hb_001946_420--Hb_031546_010 Hb_041188_010 Hb_041188_010 Hb_001946_420--Hb_041188_010 Hb_092416_020--Hb_031546_010 Hb_092416_020--Hb_041188_010 Hb_031546_010--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_031546_010--Hb_025526_110 Hb_000002_190 Hb_000002_190 Hb_005699_100--Hb_000002_190 Hb_000003_520 Hb_000003_520 Hb_005699_100--Hb_000003_520 Hb_000005_170 Hb_000005_170 Hb_005699_100--Hb_000005_170 Hb_000009_230 Hb_000009_230 Hb_005699_100--Hb_000009_230 Hb_000011_110 Hb_000011_110 Hb_005699_100--Hb_000011_110 Hb_000012_390 Hb_000012_390 Hb_005699_100--Hb_000012_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 3.58462 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0581407 0

CAGE analysis