Hb_031546_010

Information

Type -
Description -
Location Contig31546: 946-1269
Sequence    

Annotation

kegg
ID rcu:RCOM_1013820
description hypothetical protein
nr
ID KDP21062.1
description hypothetical protein JCGZ_21533 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JBB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21533 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031546_010 0.0 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
2 Hb_092416_020 0.011328672 - - protein with unknown function [Ricinus communis]
3 Hb_001946_420 0.0148943721 - - protein with unknown function [Ricinus communis]
4 Hb_000056_140 0.0311044127 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
5 Hb_001688_040 0.0344657803 - - conserved hypothetical protein [Ricinus communis]
6 Hb_041188_010 0.0485139481 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
7 Hb_025526_110 0.0518266208 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
8 Hb_005276_180 0.0600943494 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
9 Hb_020712_020 0.0605837196 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
10 Hb_000355_020 0.0697211742 - - -
11 Hb_093084_040 0.0709804931 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
12 Hb_001278_010 0.0720649382 - - conserved hypothetical protein [Ricinus communis]
13 Hb_154146_010 0.0922347908 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
14 Hb_001304_150 0.0950262073 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
15 Hb_106677_010 0.0965137913 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
16 Hb_000313_240 0.1067736144 - - hypothetical protein RCOM_0377590 [Ricinus communis]
17 Hb_012090_010 0.1072916075 - - hypothetical protein RCOM_0904330 [Ricinus communis]
18 Hb_000331_600 0.1100508085 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
19 Hb_000479_100 0.1114047099 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
20 Hb_002092_050 0.1126879678 - - hypothetical protein JCGZ_05877 [Jatropha curcas]

Gene co-expression network

sample Hb_031546_010 Hb_031546_010 Hb_092416_020 Hb_092416_020 Hb_031546_010--Hb_092416_020 Hb_001946_420 Hb_001946_420 Hb_031546_010--Hb_001946_420 Hb_000056_140 Hb_000056_140 Hb_031546_010--Hb_000056_140 Hb_001688_040 Hb_001688_040 Hb_031546_010--Hb_001688_040 Hb_041188_010 Hb_041188_010 Hb_031546_010--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_031546_010--Hb_025526_110 Hb_092416_020--Hb_001946_420 Hb_092416_020--Hb_000056_140 Hb_092416_020--Hb_001688_040 Hb_005276_180 Hb_005276_180 Hb_092416_020--Hb_005276_180 Hb_092416_020--Hb_041188_010 Hb_001946_420--Hb_000056_140 Hb_001946_420--Hb_001688_040 Hb_001946_420--Hb_005276_180 Hb_001946_420--Hb_041188_010 Hb_000056_140--Hb_001688_040 Hb_000056_140--Hb_005276_180 Hb_093084_040 Hb_093084_040 Hb_000056_140--Hb_093084_040 Hb_001688_040--Hb_005276_180 Hb_001688_040--Hb_093084_040 Hb_041188_010--Hb_025526_110 Hb_020712_020 Hb_020712_020 Hb_041188_010--Hb_020712_020 Hb_000355_020 Hb_000355_020 Hb_041188_010--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_041188_010--Hb_001278_010 Hb_154146_010 Hb_154146_010 Hb_041188_010--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_041188_010--Hb_001304_150 Hb_025526_110--Hb_020712_020 Hb_025526_110--Hb_000355_020 Hb_025526_110--Hb_001278_010 Hb_025526_110--Hb_154146_010 Hb_025526_110--Hb_001304_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 2.76734 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.11138 0

CAGE analysis