Hb_092416_020

Information

Type -
Description -
Location Contig92416: 3814-4147
Sequence    

Annotation

kegg
ID rcu:RCOM_0143940
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002533328.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LNK1
description Ras-related protein RABA3 OS=Arabidopsis thaliana GN=RABA3 PE=2 SV=1
trembl
ID B9T509
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0143940 PE=3 SV=1
Gene Ontology
ID GO:0005634
description ras-related protein raba3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_092416_020 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_001946_420 0.0035685954 - - protein with unknown function [Ricinus communis]
3 Hb_031546_010 0.011328672 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
4 Hb_000056_140 0.0198117235 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE6 [Vitis vinifera]
5 Hb_001688_040 0.0231844527 - - conserved hypothetical protein [Ricinus communis]
6 Hb_005276_180 0.0489609189 - - hypothetical protein POPTR_0005s23040g [Populus trichocarpa]
7 Hb_041188_010 0.0597207428 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
8 Hb_025526_110 0.0630196651 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
9 Hb_020712_020 0.0717379256 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
10 Hb_093084_040 0.0723096637 transcription factor TF Family: LOB hypothetical protein POPTR_0015s09370g [Populus trichocarpa]
11 Hb_000355_020 0.080831379 - - -
12 Hb_001278_010 0.0831633396 - - conserved hypothetical protein [Ricinus communis]
13 Hb_106677_010 0.0924415705 - - 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase, putative [Ricinus communis]
14 Hb_154146_010 0.1032241762 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
15 Hb_001304_150 0.1059995867 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
16 Hb_000479_100 0.1065911953 - - Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic [Gossypium arboreum]
17 Hb_005699_100 0.1139145591 - - hypothetical protein POPTR_0013s12390g [Populus trichocarpa]
18 Hb_000313_240 0.1176776151 - - hypothetical protein RCOM_0377590 [Ricinus communis]
19 Hb_012090_010 0.1181924801 - - hypothetical protein RCOM_0904330 [Ricinus communis]
20 Hb_000645_040 0.1205438999 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_092416_020 Hb_092416_020 Hb_001946_420 Hb_001946_420 Hb_092416_020--Hb_001946_420 Hb_031546_010 Hb_031546_010 Hb_092416_020--Hb_031546_010 Hb_000056_140 Hb_000056_140 Hb_092416_020--Hb_000056_140 Hb_001688_040 Hb_001688_040 Hb_092416_020--Hb_001688_040 Hb_005276_180 Hb_005276_180 Hb_092416_020--Hb_005276_180 Hb_041188_010 Hb_041188_010 Hb_092416_020--Hb_041188_010 Hb_001946_420--Hb_031546_010 Hb_001946_420--Hb_000056_140 Hb_001946_420--Hb_001688_040 Hb_001946_420--Hb_005276_180 Hb_001946_420--Hb_041188_010 Hb_031546_010--Hb_000056_140 Hb_031546_010--Hb_001688_040 Hb_031546_010--Hb_041188_010 Hb_025526_110 Hb_025526_110 Hb_031546_010--Hb_025526_110 Hb_000056_140--Hb_001688_040 Hb_000056_140--Hb_005276_180 Hb_093084_040 Hb_093084_040 Hb_000056_140--Hb_093084_040 Hb_001688_040--Hb_005276_180 Hb_001688_040--Hb_093084_040 Hb_005276_180--Hb_031546_010 Hb_005699_100 Hb_005699_100 Hb_005276_180--Hb_005699_100 Hb_041188_010--Hb_025526_110 Hb_020712_020 Hb_020712_020 Hb_041188_010--Hb_020712_020 Hb_000355_020 Hb_000355_020 Hb_041188_010--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_041188_010--Hb_001278_010 Hb_154146_010 Hb_154146_010 Hb_041188_010--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_041188_010--Hb_001304_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 5.82533 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.203221 0

CAGE analysis