Hb_010050_010

Information

Type -
Description -
Location Contig10050: 6898-7131
Sequence    

Annotation

kegg
ID pop:POPTR_0005s03910g
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID B9MZS6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s03910g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00351: 6944-8977
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010050_010 0.0 - - -
2 Hb_000237_010 0.1019932567 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
3 Hb_000959_150 0.154921923 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
4 Hb_000563_620 0.1573699383 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
5 Hb_140024_010 0.1651382461 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
6 Hb_002999_010 0.1697377615 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
7 Hb_007477_020 0.1749286904 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
8 Hb_001013_070 0.1792742082 - - -
9 Hb_000480_050 0.1818734166 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
10 Hb_050229_030 0.1840787605 - - unnamed protein product [Coffea canephora]
11 Hb_060236_010 0.193677469 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
12 Hb_003494_100 0.1963436321 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
13 Hb_177587_010 0.196368214 - - PREDICTED: putative amidase C869.01 [Jatropha curcas]
14 Hb_159012_010 0.1975422522 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
15 Hb_005373_030 0.1982344924 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000320_250 0.2025389189 - - hypothetical protein POPTR_0021s00440g [Populus trichocarpa]
17 Hb_000334_040 0.204121081 - - hypothetical protein POPTR_0001s41860g [Populus trichocarpa]
18 Hb_016120_030 0.2049616438 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
19 Hb_002368_120 0.2054960464 - - hypothetical protein VITISV_033181 [Vitis vinifera]
20 Hb_033153_030 0.2077730565 - - PREDICTED: uncharacterized protein LOC105650145 [Jatropha curcas]

Gene co-expression network

sample Hb_010050_010 Hb_010050_010 Hb_000237_010 Hb_000237_010 Hb_010050_010--Hb_000237_010 Hb_000959_150 Hb_000959_150 Hb_010050_010--Hb_000959_150 Hb_000563_620 Hb_000563_620 Hb_010050_010--Hb_000563_620 Hb_140024_010 Hb_140024_010 Hb_010050_010--Hb_140024_010 Hb_002999_010 Hb_002999_010 Hb_010050_010--Hb_002999_010 Hb_007477_020 Hb_007477_020 Hb_010050_010--Hb_007477_020 Hb_000237_010--Hb_007477_020 Hb_003494_100 Hb_003494_100 Hb_000237_010--Hb_003494_100 Hb_000237_010--Hb_140024_010 Hb_002368_120 Hb_002368_120 Hb_000237_010--Hb_002368_120 Hb_106677_010 Hb_106677_010 Hb_000237_010--Hb_106677_010 Hb_014096_010 Hb_014096_010 Hb_000959_150--Hb_014096_010 Hb_000959_150--Hb_140024_010 Hb_000959_150--Hb_000563_620 Hb_004241_050 Hb_004241_050 Hb_000959_150--Hb_004241_050 Hb_008536_030 Hb_008536_030 Hb_000959_150--Hb_008536_030 Hb_060236_010 Hb_060236_010 Hb_000563_620--Hb_060236_010 Hb_000563_620--Hb_004241_050 Hb_006326_020 Hb_006326_020 Hb_000563_620--Hb_006326_020 Hb_007007_020 Hb_007007_020 Hb_000563_620--Hb_007007_020 Hb_000146_100 Hb_000146_100 Hb_000563_620--Hb_000146_100 Hb_041063_010 Hb_041063_010 Hb_000563_620--Hb_041063_010 Hb_016120_030 Hb_016120_030 Hb_140024_010--Hb_016120_030 Hb_000959_200 Hb_000959_200 Hb_140024_010--Hb_000959_200 Hb_140024_010--Hb_002999_010 Hb_004031_060 Hb_004031_060 Hb_140024_010--Hb_004031_060 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_000480_050 Hb_000480_050 Hb_002999_010--Hb_000480_050 Hb_002999_010--Hb_016120_030 Hb_004926_010 Hb_004926_010 Hb_002999_010--Hb_004926_010 Hb_002999_010--Hb_007477_020 Hb_002999_010--Hb_004031_060 Hb_003058_090 Hb_003058_090 Hb_007477_020--Hb_003058_090 Hb_007477_020--Hb_000480_050 Hb_033153_030 Hb_033153_030 Hb_007477_020--Hb_033153_030 Hb_002874_100 Hb_002874_100 Hb_007477_020--Hb_002874_100 Hb_007477_020--Hb_005373_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 8.38066 0 96.6297 0 4.04703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 13.1718 0

CAGE analysis