Hb_000563_620

Information

Type -
Description -
Location Contig563: 467118-467708
Sequence    

Annotation

kegg
ID pop:POPTR_0008s22340g
description hypothetical protein
nr
ID KDP27809.1
description hypothetical protein JCGZ_18889 [Jatropha curcas]
swissprot
ID Q9C6P6
description Stigma-specific STIG1-like protein 4 OS=Arabidopsis thaliana GN=At1g50650 PE=3 SV=1
trembl
ID A0A067K7M2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18889 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_620 0.0 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
2 Hb_060236_010 0.0989820733 - - hypothetical protein JCGZ_26099 [Jatropha curcas]
3 Hb_004241_050 0.1275931547 - - Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]
4 Hb_006326_020 0.1278454852 - - -
5 Hb_007007_020 0.1533697979 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000146_100 0.1539613258 - - conserved hypothetical protein [Ricinus communis]
7 Hb_041063_010 0.1551170134 - - Disease resistance protein RFL1, putative [Ricinus communis]
8 Hb_002999_010 0.1568888173 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
9 Hb_082733_010 0.1569625544 - - hypothetical protein JCGZ_23600 [Jatropha curcas]
10 Hb_010050_010 0.1573699383 - - -
11 Hb_000959_150 0.1583570775 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
12 Hb_159012_010 0.1643527311 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 [Jatropha curcas]
13 Hb_000480_050 0.1650151738 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
14 Hb_001091_010 0.1670907807 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
15 Hb_000059_110 0.1747797017 transcription factor TF Family: MYB MYB transcriptional factor [Populus tremula x Populus tremuloides]
16 Hb_000483_290 0.1798661791 - - PREDICTED: ankyrin-1-like [Prunus mume]
17 Hb_010681_020 0.1798696702 - - JHL22C18.10 [Jatropha curcas]
18 Hb_007101_240 0.1798883165 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000421_150 0.1799169677 - - Zinc finger protein GIS2 [Medicago truncatula]
20 Hb_000345_520 0.1801034434 - - hypothetical protein POPTR_0013s02440g [Populus trichocarpa]

Gene co-expression network

sample Hb_000563_620 Hb_000563_620 Hb_060236_010 Hb_060236_010 Hb_000563_620--Hb_060236_010 Hb_004241_050 Hb_004241_050 Hb_000563_620--Hb_004241_050 Hb_006326_020 Hb_006326_020 Hb_000563_620--Hb_006326_020 Hb_007007_020 Hb_007007_020 Hb_000563_620--Hb_007007_020 Hb_000146_100 Hb_000146_100 Hb_000563_620--Hb_000146_100 Hb_041063_010 Hb_041063_010 Hb_000563_620--Hb_041063_010 Hb_082733_010 Hb_082733_010 Hb_060236_010--Hb_082733_010 Hb_060236_010--Hb_004241_050 Hb_060236_010--Hb_041063_010 Hb_060236_010--Hb_007007_020 Hb_002054_090 Hb_002054_090 Hb_060236_010--Hb_002054_090 Hb_004241_050--Hb_041063_010 Hb_000059_110 Hb_000059_110 Hb_004241_050--Hb_000059_110 Hb_001115_010 Hb_001115_010 Hb_004241_050--Hb_001115_010 Hb_004241_050--Hb_082733_010 Hb_006326_020--Hb_007007_020 Hb_001975_170 Hb_001975_170 Hb_006326_020--Hb_001975_170 Hb_007017_130 Hb_007017_130 Hb_006326_020--Hb_007017_130 Hb_004634_010 Hb_004634_010 Hb_006326_020--Hb_004634_010 Hb_099777_010 Hb_099777_010 Hb_006326_020--Hb_099777_010 Hb_000967_070 Hb_000967_070 Hb_006326_020--Hb_000967_070 Hb_002413_030 Hb_002413_030 Hb_007007_020--Hb_002413_030 Hb_007007_020--Hb_082733_010 Hb_003057_040 Hb_003057_040 Hb_007007_020--Hb_003057_040 Hb_001091_010 Hb_001091_010 Hb_007007_020--Hb_001091_010 Hb_001645_100 Hb_001645_100 Hb_000146_100--Hb_001645_100 Hb_004724_010 Hb_004724_010 Hb_000146_100--Hb_004724_010 Hb_000658_020 Hb_000658_020 Hb_000146_100--Hb_000658_020 Hb_000501_090 Hb_000501_090 Hb_000146_100--Hb_000501_090 Hb_015026_010 Hb_015026_010 Hb_000146_100--Hb_015026_010 Hb_000146_100--Hb_000059_110 Hb_000032_330 Hb_000032_330 Hb_041063_010--Hb_000032_330 Hb_000098_210 Hb_000098_210 Hb_041063_010--Hb_000098_210 Hb_041063_010--Hb_002054_090 Hb_131417_010 Hb_131417_010 Hb_041063_010--Hb_131417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.063032 0 0.747969 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.186313 0

CAGE analysis